Protein : Qrob_P0371960.2 Q. robur
Protein Identifier  ? Qrob_P0371960.2 Organism . Name  Quercus robur
Protein Description  (M=5) K07374 - tubulin alpha Alias (in v1)  Qrob_P0847380.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 408  
Kegg Orthology  K07374
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0007017 microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0043234 protein complex A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
GO:0051258 protein polymerization The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
GO:0005874 microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
GO:0005200 structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040014 1 407 + 407 Gaps:42 100.00 449 87.75 0.0 Tubulin alpha-5
blastp_kegg lcl|vvi:100260286 1 407 + 407 Gaps:42 100.00 449 87.75 0.0 tubulin alpha-1 chain-like
blastp_kegg lcl|pop:POPTR_0003s21080g 1 407 + 407 Gaps:42 99.78 450 87.75 0.0 POPTRDRAFT_831020 alpha-tubulin 2 family protein
blastp_kegg lcl|rcu:RCOM_1361220 1 407 + 407 Gaps:42 100.00 449 87.75 0.0 tubulin alpha chain putative
blastp_kegg lcl|pda:103723819 1 407 + 407 Gaps:43 100.00 450 87.11 0.0 tubulin alpha-3 chain
blastp_kegg lcl|obr:102713379 1 407 + 407 Gaps:43 100.00 450 87.11 0.0 tubulin alpha-3 chain-like
blastp_kegg lcl|zma:542582 1 407 + 407 Gaps:43 100.00 450 87.11 0.0 tua6 TUBA6 alpha tubulin6
blastp_kegg lcl|cmo:103491629 1 407 + 407 Gaps:42 100.00 449 87.31 0.0 tubulin alpha-3 chain
blastp_kegg lcl|mus:103984973 1 407 + 407 Gaps:43 100.00 450 87.33 0.0 tubulin alpha-3 chain
blastp_kegg lcl|pda:103717644 1 407 + 407 Gaps:43 100.00 450 86.89 0.0 tubulin alpha-1 chain-like
blastp_pdb 1z2b_C 1 406 + 406 Gaps:42 100.00 448 72.99 0.0 mol:protein length:448 Tubulin alpha chain
blastp_pdb 1z2b_A 1 406 + 406 Gaps:42 100.00 448 72.99 0.0 mol:protein length:448 Tubulin alpha chain
blastp_pdb 3e22_C 1 396 + 396 Gaps:42 97.55 449 74.66 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3e22_A 1 396 + 396 Gaps:42 97.55 449 74.66 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3du7_C 1 396 + 396 Gaps:42 97.55 449 74.66 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3du7_A 1 396 + 396 Gaps:42 97.55 449 74.66 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3ryi_C 1 398 + 398 Gaps:42 97.56 451 73.86 0.0 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryi_A 1 398 + 398 Gaps:42 97.56 451 73.86 0.0 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryh_C 1 398 + 398 Gaps:42 97.56 451 73.86 0.0 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryh_A 1 398 + 398 Gaps:42 97.56 451 73.86 0.0 mol:protein length:451 Tubulin alpha chain
blastp_uniprot_sprot sp|O22349|TBA3_ELEIN 1 407 + 407 Gaps:43 100.00 450 87.33 0.0 Tubulin alpha-3 chain OS Eleusine indica GN TUBA3 PE 2 SV 1
blastp_uniprot_sprot sp|P33627|TBA6_MAIZE 1 407 + 407 Gaps:43 100.00 450 87.11 0.0 Tubulin alpha-6 chain OS Zea mays GN TUBA6 PE 2 SV 1
blastp_uniprot_sprot sp|P28752|TBA1_ORYSJ 1 407 + 407 Gaps:43 100.00 450 86.67 0.0 Tubulin alpha-1 chain OS Oryza sativa subsp. japonica GN TUBA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q43473|TBA1_HORVU 1 407 + 407 Gaps:43 100.00 450 86.67 0.0 Tubulin alpha-1 chain OS Hordeum vulgare GN TUBA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q02245|TBA5_MAIZE 1 407 + 407 Gaps:43 100.00 450 86.89 0.0 Tubulin alpha-5 chain OS Zea mays GN TUBA5 PE 2 SV 1
blastp_uniprot_sprot sp|Q38771|TBA_AVESA 1 401 + 401 Gaps:42 99.11 447 86.46 0.0 Tubulin alpha chain OS Avena sativa GN TUBA PE 2 SV 1
blastp_uniprot_sprot sp|B9DHQ0|TBA5_ARATH 1 393 + 393 Gaps:42 96.67 450 87.13 0.0 Tubulin alpha-5 chain OS Arabidopsis thaliana GN TUBA5 PE 2 SV 2
blastp_uniprot_sprot sp|Q56WH1|TBA3_ARATH 1 393 + 393 Gaps:42 96.67 450 87.13 0.0 Tubulin alpha-3 chain OS Arabidopsis thaliana GN TUBA3 PE 2 SV 2
blastp_uniprot_sprot sp|Q6VAG0|TBA2_GOSHI 1 407 + 407 Gaps:43 100.00 450 82.00 0.0 Tubulin alpha-2 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|P33629|TBA_PRUDU 1 407 + 407 Gaps:43 100.00 450 81.78 0.0 Tubulin alpha chain OS Prunus dulcis GN TUBA PE 2 SV 1

34 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 343 396 54 G3DSA:1.10.287.600 none none IPR023123
Coils 376 397 22 Coil none none none
SMART 248 351 104 SM00865 none Tubulin/FtsZ family, C-terminal domain IPR018316
ProSitePatterns 142 148 7 PS00227 none Tubulin subunits alpha, beta, and gamma signature. IPR017975
PANTHER 1 407 407 PTHR11588 none none IPR000217
Gene3D 306 341 36 G3DSA:3.30.1330.20 none none IPR018316
SMART 49 246 198 SM00864 none Tubulin/FtsZ family, GTPase domain IPR003008
Pfam 3 225 223 PF00091 none Tubulin/FtsZ family, GTPase domain IPR003008
Pfam 263 306 44 PF03953 none Tubulin C-terminal domain IPR018316
SUPERFAMILY 1 244 244 SSF52490 none none IPR003008
Gene3D 1 265 265 G3DSA:3.40.50.1440 none none IPR003008
PRINTS 305 318 14 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 214 226 13 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 18 33 16 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 88 101 14 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 318 337 20 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 148 160 13 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 45 58 14 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 161 172 12 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 380 396 17 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 120 128 9 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 343 359 17 PR01162 none Alpha-tubulin signature IPR002452
ProSitePatterns 1 4 4 PS00228 "Reactome:REACT_152" Tubulin-beta mRNA autoregulation signal. IPR013838
PANTHER 1 407 407 PTHR11588:SF48 none none none
SUPERFAMILY 246 394 149 SSF55307 none none IPR008280
Gene3D 266 305 40 G3DSA:3.30.1330.20 none none IPR018316
PRINTS 95 106 12 PR01161 none Tubulin signature IPR000217
PRINTS 108 132 25 PR01161 none Tubulin signature IPR000217
PRINTS 134 152 19 PR01161 none Tubulin signature IPR000217
PRINTS 53 72 20 PR01161 none Tubulin signature IPR000217

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting