Protein : Qrob_P0370790.2 Q. robur
Protein Identifier  ? Qrob_P0370790.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR31384:SF2 - AUXIN RESPONSE FACTOR 8 (PTHR31384:SF2) Alias (in v1)  Qrob_P0263130.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 551  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100780393 8 550 + 543 Gaps:9 63.28 847 72.76 0.0 auxin response factor 8-like
blastp_kegg lcl|mdm:103405902 8 550 + 543 Gaps:16 62.69 847 73.45 0.0 auxin response factor 8
blastp_kegg lcl|pvu:PHAVU_008G242400g 8 550 + 543 Gaps:16 63.15 844 73.36 0.0 hypothetical protein
blastp_kegg lcl|fve:101295755 8 550 + 543 Gaps:20 62.87 835 73.71 0.0 auxin response factor 8-like isoform 1
blastp_kegg lcl|gmx:100784804 8 550 + 543 Gaps:13 63.11 843 71.99 0.0 auxin response factor 8-like
blastp_kegg lcl|pxb:103959932 8 550 + 543 Gaps:16 62.62 848 73.26 0.0 auxin response factor 8-like
blastp_kegg lcl|pop:POPTR_0004s07640g 8 529 + 522 Gaps:12 62.15 827 75.10 0.0 POPTRDRAFT_1075891 hypothetical protein
blastp_kegg lcl|gmx:100784373 8 550 + 543 Gaps:14 63.15 844 71.29 0.0 auxin response factor 8-like
blastp_kegg lcl|vvi:100258129 8 550 + 543 Gaps:18 63.24 846 74.95 0.0 auxin response factor 8-like
blastp_kegg lcl|pmum:103327336 8 550 + 543 Gaps:22 62.41 838 75.14 0.0 auxin response factor 8
blastp_uniprot_sprot sp|Q9FGV1|ARFH_ARATH 8 516 + 509 Gaps:33 60.17 811 62.91 7e-180 Auxin response factor 8 OS Arabidopsis thaliana GN ARF8 PE 2 SV 2
blastp_uniprot_sprot sp|Q258Y5|ARFL_ORYSI 8 516 + 509 Gaps:24 60.17 816 51.73 1e-130 Auxin response factor 12 OS Oryza sativa subsp. indica GN ARF12 PE 3 SV 1
blastp_uniprot_sprot sp|Q0J951|ARFL_ORYSJ 8 516 + 509 Gaps:26 60.27 818 51.52 1e-128 Auxin response factor 12 OS Oryza sativa subsp. japonica GN ARF12 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H6V4|ARFF_ORYSJ 8 550 + 543 Gaps:84 65.09 908 43.82 3e-107 Auxin response factor 6 OS Oryza sativa subsp. japonica GN ARF6 PE 1 SV 1
blastp_uniprot_sprot sp|A2X1A1|ARFF_ORYSI 8 550 + 543 Gaps:84 65.09 908 43.82 3e-107 Auxin response factor 6 OS Oryza sativa subsp. indica GN ARF6 PE 3 SV 1
blastp_uniprot_sprot sp|Q2QM84|ARFY_ORYSJ 8 550 + 543 Gaps:97 64.96 899 39.73 7e-97 Auxin response factor 25 OS Oryza sativa subsp. japonica GN ARF25 PE 2 SV 1
blastp_uniprot_sprot sp|Q653U3|ARFQ_ORYSJ 8 162 + 155 Gaps:5 16.58 917 66.45 1e-55 Auxin response factor 17 OS Oryza sativa subsp. japonica GN ARF17 PE 2 SV 1
blastp_uniprot_sprot sp|A2YG67|ARFQ_ORYSI 8 162 + 155 Gaps:5 16.58 917 66.45 1e-55 Auxin response factor 17 OS Oryza sativa subsp. indica GN ARF17 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZTX8|ARFF_ARATH 279 518 + 240 Gaps:32 29.09 935 43.38 3e-52 Auxin response factor 6 OS Arabidopsis thaliana GN ARF6 PE 1 SV 2
blastp_uniprot_sprot sp|P93024|ARFE_ARATH 8 531 + 524 Gaps:109 61.97 902 29.70 7e-43 Auxin response factor 5 OS Arabidopsis thaliana GN ARF5 PE 1 SV 3
rpsblast_cdd gnl|CDD|202200 423 516 + 94 Gaps:6 53.19 188 30.00 7e-16 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|191545 6 33 + 28 none 33.73 83 60.71 5e-08 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_kog gnl|CDD|38804 114 262 + 149 Gaps:71 9.01 2220 39.50 3e-09 KOG3598 KOG3598 KOG3598 Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 418 498 81 SSF54277 none none none
PANTHER 8 548 541 PTHR31384 none none none
Pfam 421 514 94 PF02309 none AUX/IAA family IPR003311
PANTHER 8 548 541 PTHR31384:SF2 none none none
Pfam 8 33 26 PF06507 none Auxin response factor IPR010525
ProSiteProfiles 424 508 85 PS51745 none PB1 domain profile. IPR000270

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting