Protein : Qrob_P0367940.2 Q. robur
Protein Identifier  ? Qrob_P0367940.2 Organism . Name  Quercus robur
Score  90.2 Score Type  egn
Protein Description  (M=2) K06676 - condensin complex subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 625  
Kegg Orthology  K06676
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0007076 mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
GO:0000796 condensin complex A multisubunit protein complex that plays a central role in chromosome condensation.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100251638 1 617 + 617 Gaps:49 87.83 674 71.45 0.0 condensin complex subunit 2-like
blastp_kegg lcl|pmum:103329315 1 623 + 623 Gaps:60 90.51 653 72.25 0.0 condensin complex subunit 2
blastp_kegg lcl|tcc:TCM_002122 1 618 + 618 Gaps:47 88.14 666 69.51 0.0 Condensin complex subunit 2 isoform 1
blastp_kegg lcl|cit:102624461 1 623 + 623 Gaps:52 90.65 663 68.05 0.0 condensin complex subunit 2-like
blastp_kegg lcl|fve:101298358 1 623 + 623 Gaps:59 90.33 662 69.57 0.0 condensin complex subunit 2-like
blastp_kegg lcl|pxb:103938830 44 617 + 574 Gaps:65 86.72 640 69.73 0.0 condensin complex subunit 2-like
blastp_kegg lcl|rcu:RCOM_1016740 1 624 + 624 Gaps:66 99.32 584 69.66 0.0 Condensin complex subunit putative
blastp_kegg lcl|cic:CICLE_v10014542mg 1 623 + 623 Gaps:58 90.53 655 68.13 0.0 hypothetical protein
blastp_kegg lcl|cmo:103495989 1 617 + 617 Gaps:54 89.41 661 69.04 0.0 condensin complex subunit 2
blastp_kegg lcl|gmx:100793772 1 617 + 617 Gaps:53 88.32 668 66.27 0.0 condensin complex subunit 2-like
blastp_uniprot_sprot sp|Q564K3|CND2_ARATH 1 617 + 617 Gaps:76 88.97 671 63.48 0.0 Condensin complex subunit 2 OS Arabidopsis thaliana GN CAPH PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y7R3|CND2_SCHPO 26 611 + 586 Gaps:106 84.10 742 27.24 4e-37 Condensin complex subunit 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cnd2 PE 1 SV 1
blastp_uniprot_sprot sp|O13067|CND2_XENLA 5 333 + 329 Gaps:32 48.50 699 28.32 3e-26 Condensin complex subunit 2 OS Xenopus laevis GN ncaph PE 1 SV 1
blastp_uniprot_sprot sp|Q8C156|CND2_MOUSE 9 611 + 603 Gaps:75 59.51 731 30.57 7e-25 Condensin complex subunit 2 OS Mus musculus GN Ncaph PE 2 SV 1
blastp_uniprot_sprot sp|Q15003|CND2_HUMAN 7 233 + 227 Gaps:24 30.90 741 35.37 9e-24 Condensin complex subunit 2 OS Homo sapiens GN NCAPH PE 1 SV 3
blastp_uniprot_sprot sp|P38170|CND2_YEAST 62 245 + 184 Gaps:18 26.53 754 32.50 2e-22 Condensin complex subunit 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BRN1 PE 1 SV 3
rpsblast_cdd gnl|CDD|203328 6 619 + 614 Gaps:131 88.32 719 33.39 1e-112 pfam05786 Cnd2 Condensin complex subunit 2. This family consists of several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16 resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded but sister chromatids remain connected resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase. This family forms one of the three non-structural maintenance of chromosomes (SMC) subunits of the mitotic condensation complex along with Cnd1 and Cnd3.
rpsblast_cdd gnl|CDD|34826 68 615 + 548 Gaps:93 85.65 662 26.46 1e-40 COG5229 LOC7 Chromosome condensation complex Condensin subunit H [Chromatin structure and dynamics / Cell division and chromosome partitioning].
rpsblast_kog gnl|CDD|37539 3 617 + 615 Gaps:107 88.32 702 30.81 1e-100 KOG2328 KOG2328 KOG2328 Chromosome condensation complex Condensin subunit H [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 268 268 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 616 616 PTHR13108 none none none
Phobius 269 288 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 289 624 336 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 1 573 573 PIRSF017126 none none IPR022816
Pfam 6 618 613 PF05786 none Condensin complex subunit 2 IPR022816

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting