Protein : Qrob_P0367630.2 Q. robur
Protein Identifier  ? Qrob_P0367630.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0151//KOG2669 - Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only]. // Regulator of nuclear mRNA [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 621  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103495133 30 620 + 591 Gaps:25 85.84 692 72.90 0.0 calcium homeostasis endoplasmic reticulum protein-like
blastp_kegg lcl|cit:102606916 8 620 + 613 Gaps:58 91.58 665 73.73 0.0 calcium homeostasis endoplasmic reticulum protein-like
blastp_kegg lcl|vvi:100253849 16 620 + 605 Gaps:23 88.31 693 76.47 0.0 uncharacterized LOC100253849
blastp_kegg lcl|vvi:100255482 16 620 + 605 Gaps:25 88.15 692 75.57 0.0 uncharacterized LOC100255482
blastp_kegg lcl|csv:101220778 30 620 + 591 Gaps:26 85.74 687 73.34 0.0 uncharacterized LOC101220778
blastp_kegg lcl|cic:CICLE_v10014516mg 8 620 + 613 Gaps:58 91.58 665 73.07 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_1g092770 7 620 + 614 Gaps:30 89.25 679 73.43 0.0 Calcium homeostasis endoplasmic reticulum protein
blastp_kegg lcl|cam:101490257 26 620 + 595 Gaps:22 85.07 683 75.73 0.0 calcium homeostasis endoplasmic reticulum protein-like
blastp_kegg lcl|gmx:100816468 26 620 + 595 Gaps:18 85.21 703 73.46 0.0 calcium homeostasis endoplasmic reticulum protein-like
blastp_kegg lcl|gmx:100802329 26 620 + 595 Gaps:19 84.46 708 73.75 0.0 calcium homeostasis endoplasmic reticulum protein-like
blastp_uniprot_sprot sp|Q8CGZ0|CHERP_MOUSE 53 109 + 57 none 6.09 936 57.89 2e-12 Calcium homeostasis endoplasmic reticulum protein OS Mus musculus GN Cherp PE 1 SV 1
blastp_uniprot_sprot sp|Q8IWX8|CHERP_HUMAN 53 109 + 57 none 6.22 916 57.89 2e-12 Calcium homeostasis endoplasmic reticulum protein OS Homo sapiens GN CHERP PE 1 SV 3
blastp_uniprot_sprot sp|O15042|SR140_HUMAN 29 278 + 250 Gaps:47 20.31 1029 24.88 2e-06 U2 snRNP-associated SURP motif-containing protein OS Homo sapiens GN U2SURP PE 1 SV 2
blastp_uniprot_sprot sp|Q5R7X2|SR140_PONAB 29 278 + 250 Gaps:51 20.33 1028 26.32 2e-06 U2 snRNP-associated SURP motif-containing protein OS Pongo abelii GN U2SURP PE 2 SV 1
blastp_uniprot_sprot sp|Q6NV83|SR140_MOUSE 29 278 + 250 Gaps:47 20.31 1029 24.88 2e-06 U2 snRNP-associated SURP motif-containing protein OS Mus musculus GN U2surp PE 2 SV 3
rpsblast_cdd gnl|CDD|201983 60 108 + 49 Gaps:2 94.44 54 45.10 2e-13 pfam01805 Surp Surp module. This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.
rpsblast_cdd gnl|CDD|197818 60 112 + 53 Gaps:1 100.00 54 40.74 5e-13 smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes.
rpsblast_kog gnl|CDD|35373 7 394 + 388 Gaps:65 38.43 877 23.15 4e-13 KOG0151 KOG0151 KOG0151 Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only].
rpsblast_kog gnl|CDD|37880 220 341 + 122 Gaps:8 35.08 325 23.68 7e-07 KOG2669 KOG2669 KOG2669 Regulator of nuclear mRNA [RNA processing and modification].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 208 348 141 PS51391 none CID domain profile. IPR006569
ProSiteProfiles 62 106 45 PS50128 none SURP motif repeat profile. IPR000061
PANTHER 43 619 577 PTHR12323 none none none
SUPERFAMILY 36 108 73 SSF109905 none none IPR000061
SMART 215 345 131 SM00582 none none IPR006569
Pfam 60 108 49 PF01805 none Surp module IPR000061
SMART 60 112 53 SM00648 none Suppressor-of-White-APricot splicing regulator IPR000061
Pfam 265 333 69 PF04818 none RNA polymerase II-binding domain. IPR006903

0 Localization

20 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting