Protein : Qrob_P0359080.2 Q. robur
Protein Identifier  ? Qrob_P0359080.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K02967 - small subunit ribosomal protein S2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 73  
Kegg Orthology  K02967
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:4025096 1 72 + 72 none 30.51 236 93.06 1e-43 rps2 ViviCp010 30S ribosomal protein S2
blastp_kegg lcl|csv:3429313 1 72 + 72 none 30.51 236 90.28 3e-42 rps2 CsCp015 30S ribosomal protein S2
blastp_kegg lcl|tcc:ThcaC_p010 1 72 + 72 none 30.51 236 91.67 7e-42 rps2 ribosomal protein S2
blastp_kegg lcl|pmum:18668006 1 72 + 72 none 30.51 236 90.28 7e-42 rps2 CP95_p078 ribosomal protein S2
blastp_kegg lcl|pper:PrpeC_p010 1 72 + 72 none 30.51 236 90.28 7e-42 rps2 ribosomal protein S2
blastp_kegg lcl|fve:10251494 1 72 + 72 none 30.51 236 90.28 7e-42 rps2 FvH4_C0016 ribosomal protein S2
blastp_kegg lcl|atr:AmtrCp011 1 72 + 72 none 30.51 236 88.89 1e-41 rps2 30S ribosomal protein S2
blastp_kegg lcl|rcu:RCOM_ORF00018 2 72 + 71 none 30.08 236 90.14 2e-41 rps2 ribosomal protein S2
blastp_kegg lcl|pda:8890489 1 72 + 72 none 30.51 236 90.28 3e-41 rps2 PhdaC_p010 30S ribosomal protein S2
blastp_kegg lcl|sot:4099858 1 72 + 72 none 30.51 236 87.50 2e-40 rps2 SotuCp010 30S ribosomal protein S2
blastp_pdb 3bbn_B 1 72 + 72 none 31.17 231 88.89 2e-43 mol:protein length:231 Ribosomal Protein S2
blastp_pdb 4a2i_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S RIBOSOMAL PROTEIN S2
blastp_pdb 3r8o_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3r8n_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3ofy_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3ofx_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3ofp_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3ofo_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3ofb_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_pdb 3ofa_B 1 72 + 72 none 33.03 218 47.22 1e-18 mol:protein length:218 30S ribosomal protein S2
blastp_uniprot_sprot sp|Q0G9N0|RR2_LIRTU 1 72 + 72 none 30.51 236 93.06 3e-45 30S ribosomal protein S2 chloroplastic OS Liriodendron tulipifera GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ31|RR2_VITVI 1 72 + 72 none 30.51 236 93.06 4e-45 30S ribosomal protein S2 chloroplastic OS Vitis vinifera GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q09FX2|RR2_NANDO 1 72 + 72 none 30.51 236 93.06 5e-45 30S ribosomal protein S2 chloroplastic OS Nandina domestica GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q49L09|RR2_EUCGG 1 72 + 72 none 30.51 236 93.06 6e-45 30S ribosomal protein S2 chloroplastic OS Eucalyptus globulus subsp. globulus GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q7YJY1|RR2_CALFG 1 72 + 72 none 30.51 236 91.67 7e-45 30S ribosomal protein S2 chloroplastic OS Calycanthus floridus var. glaucus GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|A1XGM7|RR2_RANMC 1 72 + 72 none 30.51 236 93.06 1e-44 30S ribosomal protein S2 chloroplastic OS Ranunculus macranthus GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q06H08|RR2_DRIGR 1 72 + 72 none 30.51 236 91.67 2e-44 30S ribosomal protein S2 chloroplastic OS Drimys granadensis GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q09G57|RR2_PLAOC 1 72 + 72 none 30.51 236 91.67 2e-44 30S ribosomal protein S2 chloroplastic OS Platanus occidentalis GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|Q68S17|RR2_PANGI 1 72 + 72 none 30.51 236 91.67 3e-44 30S ribosomal protein S2 chloroplastic OS Panax ginseng GN rps2 PE 3 SV 1
blastp_uniprot_sprot sp|B1NWD9|RR2_MANES 2 72 + 71 none 30.08 236 91.55 8e-44 30S ribosomal protein S2 chloroplastic OS Manihot esculenta GN rps2 PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 70 70 PTHR12534 none none IPR005706
Gene3D 1 14 14 G3DSA:1.10.287.610 none none none
Gene3D 15 71 57 G3DSA:3.40.50.10490 none none none
SUPERFAMILY 1 71 71 SSF52313 none none IPR023591
ProSitePatterns 23 47 25 PS00963 none Ribosomal protein S2 signature 2. IPR018130
TIGRFAM 1 71 71 TIGR01011 none rpsB_bact: ribosomal protein uS2 IPR005706
Pfam 2 71 70 PF00318 none Ribosomal protein S2 IPR001865
PRINTS 61 72 12 PR00395 none Ribosomal protein S2 signature IPR001865
PRINTS 23 40 18 PR00395 none Ribosomal protein S2 signature IPR001865
PRINTS 40 51 12 PR00395 none Ribosomal protein S2 signature IPR001865

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting