Protein : Qrob_P0359050.2 Q. robur
Protein Identifier  ? Qrob_P0359050.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10886 - DNA-repair protein XRCC4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 167  
Kegg Orthology  K10886
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO:0006302 double-strand break repair The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102621916 2 165 + 164 Gaps:1 63.67 256 73.62 5e-78 DNA repair protein XRCC4-like
blastp_kegg lcl|rcu:RCOM_0908820 2 165 + 164 Gaps:1 62.26 265 75.15 1e-77 DNA-repair protein XRCC4 putative
blastp_kegg lcl|vvi:100252901 2 164 + 163 Gaps:1 62.55 259 74.69 3e-77 DNA repair protein XRCC4-like
blastp_kegg lcl|cic:CICLE_v10007171mg 2 165 + 164 Gaps:1 67.08 243 71.78 7e-76 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005690mg 2 165 + 164 Gaps:2 63.28 256 72.22 6e-75 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005689mg 2 165 + 164 Gaps:1 63.67 256 69.94 4e-72 hypothetical protein
blastp_kegg lcl|fve:101300686 2 162 + 161 Gaps:3 61.00 259 72.15 9e-70 DNA repair protein XRCC4-like isoform 1
blastp_kegg lcl|pmum:103324154 2 162 + 161 Gaps:3 61.00 259 71.52 3e-69 DNA repair protein XRCC4-like
blastp_kegg lcl|tcc:TCM_020798 2 165 + 164 Gaps:3 62.74 263 69.70 3e-69 DNA ligase iv-binding protein XRCC4 isoform 2
blastp_kegg lcl|mdm:103453401 2 151 + 150 Gaps:3 56.76 259 76.19 6e-69 DNA repair protein XRCC4
blastp_uniprot_sprot sp|Q682V0|XRCC4_ARATH 2 165 + 164 Gaps:14 57.58 264 67.11 6e-56 DNA repair protein XRCC4 OS Arabidopsis thaliana GN XRCC4 PE 1 SV 2

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 24 112 89 SSF58022 none none none
Pfam 54 143 90 PF06632 none DNA double-strand break repair and V(D)J recombination protein XRCC4 IPR010585
Coils 90 111 22 Coil none none none
Gene3D 26 118 93 G3DSA:1.20.5.370 none none IPR014751

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting