Protein : Qrob_P0358930.2 Q. robur
Protein Identifier  ? Qrob_P0358930.2 Organism . Name  Quercus robur
Score  58.0 Score Type  egn
Protein Description  (M=5) K05579 - NADH dehydrogenase I subunit 7 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 910  
Kegg Orthology  K05579
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0051287 NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0048038 quinone binding Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g006100 1 902 + 902 Gaps:18 99.67 899 89.17 0.0 NAD(P)H-quinone oxidoreductase subunit H
blastp_kegg lcl|mtr:MTR_6g042200 1 688 + 688 Gaps:6 98.44 705 88.47 0.0 NAD(P)H-quinone oxidoreductase subunit H
blastp_kegg lcl|mtr:MTR_7g021700 1 902 + 902 Gaps:28 99.53 635 85.76 0.0 NAD(P)H-quinone oxidoreductase subunit
blastp_kegg lcl|atr:s00456p00012010 1 561 + 561 Gaps:86 99.79 476 94.32 0.0 AMTR_s00456p00012010 hypothetical protein
blastp_kegg lcl|pper:PrpeC_p078 1 381 + 381 none 96.95 393 96.06 0.0 ndhH NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|pmum:18668097 1 381 + 381 none 96.95 393 96.06 0.0 ndhH CP95_p009 NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|fve:10251589 1 381 + 381 none 96.95 393 95.01 0.0 ndhH FvH4_C0111 NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|tcc:ThcaC_p068 1 381 + 381 none 96.95 393 93.70 0.0 ndhH NADH-plastoquinone oxidoreductase subunit 7
blastp_kegg lcl|sot:4099911 1 381 + 381 none 96.95 393 93.18 0.0 ndhH SotuCp081 NADH dehydrogenase 49 kDa subunit
blastp_kegg lcl|cam:6797537 1 381 + 381 none 96.95 393 93.44 0.0 ndhH CiarC_p066 NADH dehydrogenase subunit 7
blastp_pdb 3m9s_D 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3m9s_4 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_V 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_M 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_D 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3ias_4 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3iam_D 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3iam_4 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3i9v_D 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_pdb 3i9v_4 7 383 + 377 Gaps:5 92.42 409 43.92 1e-94 mol:protein length:409 NADH-quinone oxidoreductase subunit 4
blastp_uniprot_sprot sp|Q09WW2|NDHH_MORIN 1 381 + 381 none 96.95 393 95.28 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Morus indica GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|B1A990|NDHH_CARPA 1 381 + 381 none 96.95 393 94.75 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Carica papaya GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|B1NWK5|NDHH_MANES 1 381 + 381 none 96.95 393 93.70 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Manihot esculenta GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q2L953|NDHH_GOSHI 1 381 + 381 none 96.95 393 92.91 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Gossypium hirsutum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q49KU2|NDHH_EUCGG 1 381 + 381 none 96.95 393 93.96 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Eucalyptus globulus subsp. globulus GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q2VEC5|NDHH_SOLTU 1 381 + 381 none 96.95 393 93.18 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Solanum tuberosum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q9M3I5|NDHH_SPIOL 1 381 + 381 none 96.95 393 93.18 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Spinacia oleracea GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|B5LMS0|NDHH_CICAR 1 381 + 381 none 96.95 393 93.44 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Cicer arietinum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|Q2MI44|NDHH_SOLLC 1 381 + 381 none 96.95 393 93.18 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Solanum lycopersicum GN ndhH PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ91|NDHH_GOSBA 1 381 + 381 none 96.95 393 92.65 0.0 NAD(P)H-quinone oxidoreductase subunit H chloroplastic OS Gossypium barbadense GN ndhH PE 3 SV 1

37 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 694 712 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 523 542 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 47 58 12 PS00535 none Respiratory chain NADH dehydrogenase 49 Kd subunit signature. IPR014029
Phobius 563 633 71 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 388 738 351 PTHR11432 none none IPR001694
ProSitePatterns 445 460 16 PS00667 none Respiratory-chain NADH dehydrogenase subunit 1 signature 1. IPR018086
ProSitePatterns 808 819 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Phobius 471 490 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 799 867 69 G3DSA:3.30.70.20 none none none
Phobius 670 693 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Hamap 760 891 132 MF_01351 none NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. IPR010226
Phobius 425 470 46 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 799 828 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
SUPERFAMILY 20 381 362 SSF56762 none none IPR029014
Phobius 634 658 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 745 906 162 TIGR00403 none ndhI: NADH-plastoquinone oxidoreductase, I subunit IPR004497
Phobius 543 562 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 713 730 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 839 868 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Phobius 502 522 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 491 501 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Hamap 7 393 387 MF_01358 none NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. IPR022885
Gene3D 7 237 231 G3DSA:1.10.645.10 none none IPR029014
Gene3D 238 376 139 G3DSA:1.10.645.10 none none IPR029014
ProSitePatterns 848 859 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Pfam 402 729 328 PF00146 none NADH dehydrogenase IPR001694
SUPERFAMILY 786 886 101 SSF54862 none none none
Hamap 399 732 334 MF_01350 none NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. IPR001694
Pfam 804 859 56 PF13237 none 4Fe-4S dicluster domain IPR017896
TIGRFAM 769 886 118 TIGR01971 none NuoI: NADH-quinone oxidoreductase, chain I IPR010226

6 Localization

Analysis Start End Length
TMHMM 505 527 22
TMHMM 402 424 22
TMHMM 706 728 22
TMHMM 471 490 19
TMHMM 671 693 22
TMHMM 623 645 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting