Protein : Qrob_P0358840.2 Q. robur
Protein Identifier  ? Qrob_P0358840.2 Organism . Name  Quercus robur
Score  94.2 Score Type  egn
Protein Description  (M=4) PTHR12919//PTHR12919:SF21 - 30S RIBOSOMAL PROTEIN S16 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 232  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0009536 plastid Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PrpeC_p003 154 231 + 78 none 87.64 89 82.05 3e-38 rps16 ribosomal protein S16
blastp_kegg lcl|pmum:18667995 158 231 + 74 none 85.06 87 86.49 3e-38 rps16 CP95_p085 ribosomal protein S16
blastp_kegg lcl|gmx:3989305 154 231 + 78 none 87.64 89 82.05 5e-38 rps16 GlmaCp029 ribosomal protein S16
blastp_kegg lcl|fve:10251483 154 231 + 78 none 87.64 89 80.77 4e-37 rps16 FvH4_C0005 ribosomal protein S16
blastp_kegg lcl|vvi:4025122 154 231 + 78 Gaps:1 86.81 91 82.28 2e-36 rps16 ViviCp003 ribosomal protein S16
blastp_kegg lcl|tcc:ThcaC_p003 154 231 + 78 Gaps:1 87.50 88 84.42 2e-36 rps16 ribosomal protein S16
blastp_kegg lcl|csv:3429310 154 226 + 73 none 86.90 84 83.56 2e-35 rps16 CsCp004 ribosomal protein S16
blastp_kegg lcl|cit:4271244 154 226 + 73 none 82.95 88 80.82 1e-33 rps16 CisiCp003 ribosomal protein S16
blastp_kegg lcl|sot:4099950 154 231 + 78 Gaps:1 87.50 88 77.92 8e-32 rps16 SotuCp003 ribosomal protein S16
blastp_kegg lcl|sly:3950458 154 231 + 78 Gaps:1 87.50 88 77.92 8e-32 rps16 LyesC2p087 ribosomal protein S16
blastp_pdb 3bbn_P 154 231 + 78 Gaps:1 87.50 88 74.03 3e-31 mol:protein length:88 Ribosomal Protein S16
blastp_pdb 3pyu_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3pys_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3pyq_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3pyn_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3ms0_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3mr8_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 1voz_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 1vox_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 1vov_P 159 221 + 63 Gaps:3 79.52 83 42.42 7e-10 mol:protein length:83 30S ribosomal protein S16
blastp_uniprot_sprot sp|Q09X35|RR16_MORIN 155 231 + 77 none 86.52 89 85.71 1e-41 30S ribosomal protein S16 chloroplastic OS Morus indica GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2PMS5|RR16_SOYBN 154 231 + 78 none 87.64 89 82.05 2e-39 30S ribosomal protein S16 chloroplastic OS Glycine max GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ38|RR16_VITVI 154 231 + 78 Gaps:1 86.81 91 82.28 8e-38 30S ribosomal protein S16 chloroplastic OS Vitis vinifera GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2QDA6|RR16_CUCSA 158 226 + 69 none 81.18 85 86.96 3e-36 30S ribosomal protein S16 chloroplastic OS Cucumis sativus GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2L8Y7|RR16_GOSHI 154 226 + 73 none 82.95 88 82.19 3e-36 30S ribosomal protein S16 chloroplastic OS Gossypium hirsutum GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q6EW66|RR16_NYMAL 155 226 + 72 none 83.72 86 81.94 9e-36 30S ribosomal protein S16 chloroplastic OS Nymphaea alba GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q06GS8|RR16_PIPCE 154 231 + 78 none 80.41 97 75.64 1e-35 30S ribosomal protein S16 chloroplastic OS Piper cenocladum GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9N7|RR16_LIRTU 154 226 + 73 none 84.88 86 80.82 1e-35 30S ribosomal protein S16 chloroplastic OS Liriodendron tulipifera GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ17|RR16_GOSBA 154 226 + 73 none 82.95 88 80.82 1e-35 30S ribosomal protein S16 chloroplastic OS Gossypium barbadense GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q09MJ6|RR16_CITSI 154 226 + 73 none 82.95 88 80.82 4e-35 30S ribosomal protein S16 chloroplastic OS Citrus sinensis GN rps16 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 155 221 67 PTHR12919 none none IPR000307
TIGRFAM 157 219 63 TIGR00002 none S16: ribosomal protein bS16 IPR000307
PANTHER 155 221 67 PTHR12919:SF21 none none IPR026994
Gene3D 158 221 64 G3DSA:3.30.1320.10 none none IPR023803
SUPERFAMILY 157 222 66 SSF54565 none none IPR023803
Pfam 158 206 49 PF00886 none Ribosomal protein S16 IPR000307

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting