Protein : Qrob_P0358790.2 Q. robur
Protein Identifier  ? Qrob_P0358790.2 Organism . Name  Quercus robur
Score  84.8 Score Type  egn
Protein Description  (M=2) K03046 - DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 793  
Kegg Orthology  K03046
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:4025097 1 792 + 792 Gaps:16 45.91 1394 81.88 0.0 rpoC2 ViviCp011 RNA polymerase beta'' chain
blastp_kegg lcl|fve:10251495 1 792 + 792 Gaps:10 46.00 1387 80.72 0.0 rpoC2 FvH4_C0017 RNA polymerase beta subunit
blastp_kegg lcl|pmum:18668007 1 774 + 774 Gaps:26 45.18 1368 84.79 0.0 rpoC2 CP95_p077 RNA polymerase beta' subunit
blastp_kegg lcl|pper:PrpeC_p011 1 774 + 774 Gaps:26 45.18 1368 84.30 0.0 rpoC2 RNA polymerase beta' subunit
blastp_kegg lcl|csv:3429304 1 792 + 792 Gaps:18 45.40 1390 80.98 0.0 rpoC2 CsCp016 RNA polymerase beta'' chain
blastp_kegg lcl|tcc:ThcaC_p011 1 792 + 792 Gaps:28 46.73 1391 80.92 0.0 rpoC2 RNA polymerase beta' subunit
blastp_kegg lcl|sot:102588390 1 792 + 792 Gaps:16 46.12 1392 78.82 0.0 DNA-directed RNA polymerase subunit beta''-like
blastp_kegg lcl|sot:4099930 1 792 + 792 Gaps:16 46.12 1392 78.66 0.0 rpoC2 SotuCp011 RNA polymerase beta'' chain
blastp_kegg lcl|sly:3950457 1 792 + 792 Gaps:16 46.12 1392 78.50 0.0 rpoC2 LyesC2p079 RNA polymerase beta' subunit
blastp_kegg lcl|rcu:RCOM_ORF00019 1 792 + 792 Gaps:31 46.05 1405 79.29 0.0 rpoC2 RNA polymerase beta subunit
blastp_pdb 3lu0_D 515 732 + 218 Gaps:46 18.62 1407 37.79 4e-31 mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
blastp_pdb 3iyd_D 515 732 + 218 Gaps:46 18.54 1413 37.79 4e-31 mol:protein length:1413 DNA-directed RNA polymerase subunit beta
blastp_pdb 3eql_N 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_pdb 3eql_D 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_pdb 3dxj_N 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 BACTRIAL RNA POLYMERASE BETA-PRIME SUBUNIT C
blastp_pdb 3dxj_D 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 BACTRIAL RNA POLYMERASE BETA-PRIME SUBUNIT C
blastp_pdb 3aoi_N 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_pdb 3aoi_I 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_pdb 3aoi_D 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_pdb 3aoh_N 605 760 + 156 Gaps:7 10.56 1524 42.24 2e-26 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_uniprot_sprot sp|Q0ZJ30|RPOC2_VITVI 1 792 + 792 Gaps:16 45.91 1394 81.88 0.0 DNA-directed RNA polymerase subunit beta'' OS Vitis vinifera GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|B1A925|RPOC2_CARPA 1 792 + 792 Gaps:32 46.36 1387 82.27 0.0 DNA-directed RNA polymerase subunit beta'' OS Carica papaya GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|B1NWE0|RPOC2_MANES 1 792 + 792 Gaps:15 45.87 1393 81.38 0.0 DNA-directed RNA polymerase subunit beta'' OS Manihot esculenta GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|Q68S16|RPOC2_PANGI 1 792 + 792 Gaps:19 46.50 1387 80.31 0.0 DNA-directed RNA polymerase subunit beta'' OS Panax ginseng GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|Q33C48|RPOC2_NICTO 1 792 + 792 Gaps:16 46.12 1392 79.75 0.0 DNA-directed RNA polymerase subunit beta'' OS Nicotiana tomentosiformis GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|Q4VZP3|RPOC2_CUCSA 1 792 + 792 Gaps:18 45.27 1394 80.98 0.0 DNA-directed RNA polymerase subunit beta'' OS Cucumis sativus GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|P38550|RPOC2_TOBAC 1 792 + 792 Gaps:16 46.12 1392 79.60 0.0 DNA-directed RNA polymerase subunit beta'' OS Nicotiana tabacum GN rpoC2 PE 3 SV 2
blastp_uniprot_sprot sp|Q3C1G9|RPOC2_NICSY 1 792 + 792 Gaps:16 46.12 1392 79.60 0.0 DNA-directed RNA polymerase subunit beta'' OS Nicotiana sylvestris GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|Q49L08|RPOC2_EUCGG 1 792 + 792 Gaps:23 45.76 1392 80.38 0.0 DNA-directed RNA polymerase subunit beta'' OS Eucalyptus globulus subsp. globulus GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIJ7|RPOC2_SOLBU 1 792 + 792 Gaps:16 46.12 1392 78.82 0.0 DNA-directed RNA polymerase subunit beta'' OS Solanum bulbocastanum GN rpoC2 PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 162 179 18 PTHR19376 none none none
PANTHER 672 762 91 PTHR19376 none none none
PANTHER 455 634 180 PTHR19376 none none none
PANTHER 162 179 18 PTHR19376:SF32 none none none
PANTHER 672 762 91 PTHR19376:SF32 none none none
SUPERFAMILY 532 740 209 SSF64484 none none none
PANTHER 455 634 180 PTHR19376:SF32 none none none
Pfam 605 690 86 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting