Protein : Qrob_P0356780.2 Q. robur
Protein Identifier  ? Qrob_P0356780.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) K02291 - phytoene synthase [EC:2.5.1.32] Code Enzyme  EC:2.5.1.32
Gene Prediction Quality  validated Protein length 

Sequence

Length: 379  
Kegg Orthology  K02291
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s04490g 1 378 + 378 Gaps:4 100.00 382 78.01 0.0 POPTRDRAFT_177947 hypothetical protein
blastp_kegg lcl|fve:101315223 1 376 + 376 Gaps:2 99.47 380 77.25 0.0 phytoene synthase chloroplastic-like
blastp_kegg lcl|vvi:100262162 1 374 + 374 Gaps:4 90.21 419 78.57 0.0 phytoene synthase 2 chloroplastic-like
blastp_kegg lcl|tcc:TCM_040196 1 375 + 375 Gaps:6 99.21 380 79.31 0.0 Phytoene synthase 1 isoform 1
blastp_kegg lcl|rcu:RCOM_0878400 1 378 + 378 Gaps:5 99.48 385 78.07 0.0 Phytoene synthase chloroplast precursor putative
blastp_kegg lcl|cic:CICLE_v10018150mg 1 376 + 376 Gaps:6 99.22 385 77.75 0.0 hypothetical protein
blastp_kegg lcl|pmum:103337093 1 366 + 366 Gaps:4 93.91 394 79.46 0.0 phytoene synthase 2 chloroplastic-like
blastp_kegg lcl|pxb:103964329 1 376 + 376 Gaps:4 99.48 382 75.26 0.0 phytoene synthase 2 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa014590mg 1 366 + 366 Gaps:5 94.13 392 79.40 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s21310g 1 378 + 378 Gaps:4 100.00 382 76.18 0.0 hypothetical protein
blastp_pdb 3ae0_B 90 358 + 269 Gaps:19 90.78 293 27.44 7e-22 mol:protein length:293 Dehydrosqualene synthase
blastp_pdb 3ae0_A 90 358 + 269 Gaps:19 90.78 293 27.44 7e-22 mol:protein length:293 Dehydrosqualene synthase
blastp_pdb 4ea2_A 90 358 + 269 Gaps:19 92.68 287 27.44 1e-21 mol:protein length:287 Dehydrosqualene synthase
blastp_pdb 4ea1_A 90 358 + 269 Gaps:19 92.68 287 27.44 1e-21 mol:protein length:287 Dehydrosqualene synthase
blastp_pdb 4ea0_B 90 358 + 269 Gaps:19 92.68 287 27.44 1e-21 mol:protein length:287 Dehydrosqualene synthase
blastp_pdb 4ea0_A 90 358 + 269 Gaps:19 92.68 287 27.44 1e-21 mol:protein length:287 Dehydrosqualene synthase
blastp_pdb 4e9z_A 90 358 + 269 Gaps:19 92.68 287 27.44 1e-21 mol:protein length:287 Dehydrosqualene synthase
blastp_pdb 4e9u_A 90 358 + 269 Gaps:19 92.68 287 27.44 1e-21 mol:protein length:287 Dehydrosqualene synthase
blastp_pdb 3tfv_A 90 358 + 269 Gaps:19 90.78 293 27.44 1e-21 mol:protein length:293 Dehydrosqualene synthase
blastp_pdb 3tfp_A 90 358 + 269 Gaps:19 90.78 293 27.44 1e-21 mol:protein length:293 Dehydrosqualene synthase
blastp_uniprot_sprot sp|P53797|PSY_NARPS 3 373 + 371 Gaps:22 86.76 423 63.76 4e-163 Phytoene synthase chloroplastic OS Narcissus pseudonarcissus GN PSY PE 2 SV 1
blastp_uniprot_sprot sp|P37272|PSY_CAPAN 85 370 + 286 none 68.26 419 74.48 3e-161 Phytoene synthase chloroplastic OS Capsicum annuum GN PSY1 PE 2 SV 1
blastp_uniprot_sprot sp|P37273|PSY2_SOLLC 85 373 + 289 none 93.23 310 73.70 1e-160 Phytoene synthase 2 chloroplastic (Fragment) OS Solanum lycopersicum GN PSY2 PE 2 SV 1
blastp_uniprot_sprot sp|P49293|PSY_CUCME 85 374 + 290 Gaps:1 68.96 422 73.54 2e-160 Phytoene synthase chloroplastic OS Cucumis melo GN PSY PE 2 SV 1
blastp_uniprot_sprot sp|P08196|PSY1_SOLLC 85 374 + 290 none 70.39 412 72.41 8e-160 Phytoene synthase 1 chloroplastic OS Solanum lycopersicum GN PSY1 PE 1 SV 2
blastp_uniprot_sprot sp|P37271|PSY_ARATH 30 370 + 341 Gaps:17 79.15 422 65.27 2e-159 Phytoene synthase chloroplastic OS Arabidopsis thaliana GN PSY1 PE 2 SV 2
blastp_uniprot_sprot sp|P49085|PSY_MAIZE 12 378 + 367 Gaps:14 92.93 410 58.79 2e-157 Phytoene synthase chloroplastic OS Zea mays GN Y1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SSU8|PSY_DAUCA 67 376 + 310 none 77.89 398 66.77 1e-155 Phytoene synthase chloroplastic OS Daucus carota GN PSY PE 2 SV 1
blastp_uniprot_sprot sp|P37269|CRTB_SYNE7 86 369 + 284 Gaps:6 94.16 308 60.34 1e-117 All-trans-phytoene synthase OS Synechococcus elongatus (strain PCC 7942) GN crtB PE 1 SV 2
blastp_uniprot_sprot sp|O07333|CRTY_ARTPT 83 369 + 287 Gaps:7 95.15 309 57.14 4e-111 Phytoene synthase OS Arthrospira platensis GN crtB PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 208 223 16 PS01044 none Squalene and phytoene synthases signature 1. IPR019845
Phobius 228 378 151 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 55 378 324 PTHR31480:SF2 none none none
Phobius 205 227 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 89 370 282 SSF48576 none none IPR008949
Gene3D 84 371 288 G3DSA:1.10.600.10 none none IPR008949
PANTHER 55 378 324 PTHR31480 none none none
Phobius 1 204 204 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 99 355 257 PF00494 none Squalene/phytoene synthase IPR002060
ProSitePatterns 244 269 26 PS01045 none Squalene and phytoene synthases signature 2. IPR019845

1 Localization

Analysis Start End Length
TMHMM 205 227 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting