Protein : Qrob_P0356010.2 Q. robur
Protein Identifier  ? Qrob_P0356010.2 Organism . Name  Quercus robur
Score  83.1 Score Type  egn
Protein Description  (M=1) K03264 - translation initiation factor eIF-6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 336  
Kegg Orthology  K03264
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0043022 ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
GO:0042256 mature ribosome assembly The aggregation, arrangement and bonding together of the large and small ribosomal subunits into a functional ribosome.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0280610 17 335 + 319 Gaps:17 99.18 245 90.95 1e-159 translation initiation factor putative
blastp_kegg lcl|cit:102614879 17 335 + 319 Gaps:19 99.18 245 90.53 3e-159 eukaryotic translation initiation factor 6-2-like
blastp_kegg lcl|gmx:100813909 17 335 + 319 Gaps:17 99.18 245 90.95 4e-159 eukaryotic translation initiation factor 6-2-like
blastp_kegg lcl|cic:CICLE_v10026354mg 17 335 + 319 Gaps:19 99.18 245 90.12 2e-158 hypothetical protein
blastp_kegg lcl|pmum:103336381 17 335 + 319 Gaps:17 99.18 245 89.71 4e-158 eukaryotic translation initiation factor 6-2
blastp_kegg lcl|pper:PRUPE_ppa010538mg 17 335 + 319 Gaps:17 99.18 245 89.71 4e-158 hypothetical protein
blastp_kegg lcl|tcc:TCM_000030 17 335 + 319 Gaps:17 99.18 245 89.30 1e-157 Eukaryotic translation initiation factor 6 isoform 3
blastp_kegg lcl|pvu:PHAVU_007G114800g 17 335 + 319 Gaps:19 99.18 245 88.07 2e-157 hypothetical protein
blastp_kegg lcl|vvi:100254404 17 335 + 319 Gaps:17 99.18 245 88.89 2e-157 eukaryotic translation initiation factor 6-2-like
blastp_kegg lcl|gmx:100777602 17 335 + 319 Gaps:19 99.18 245 88.89 3e-157 eukaryotic translation initiation factor 6-2-like
blastp_pdb 2x7n_B 17 314 + 298 Gaps:17 99.11 224 75.23 3e-117 mol:protein length:224 EUKARYOTIC TRANSLATION INITIATION FACTOR 6
blastp_pdb 1g62_A 17 314 + 298 Gaps:17 99.11 224 75.23 3e-117 mol:protein length:224 RIBOSOME ANTI-ASSOCIATION FACTOR EIF6
blastp_pdb 4a1d_J 20 331 + 312 Gaps:17 95.16 248 66.53 2e-109 mol:protein length:248 TRANSLATION INITIATION FACTOR EIF-6 PUTATIVE
blastp_pdb 4a1b_J 20 331 + 312 Gaps:17 95.16 248 66.53 2e-109 mol:protein length:248 TRANSLATION INITIATION FACTOR EIF-6 PUTATIVE
blastp_pdb 4a19_J 20 331 + 312 Gaps:17 95.16 248 66.53 2e-109 mol:protein length:248 TRANSLATION INITIATION FACTOR EIF-6 PUTATIVE
blastp_pdb 4a18_J 20 331 + 312 Gaps:17 95.16 248 66.53 2e-109 mol:protein length:248 TRANSLATION INITIATION FACTOR EIF-6 PUTATIVE
blastp_pdb 4adx_I 19 312 + 294 Gaps:17 95.95 222 40.38 2e-27 mol:protein length:222 AIF6
blastp_pdb 1g61_B 139 314 + 176 Gaps:5 78.51 228 38.55 4e-25 mol:protein length:228 TRANSLATION INITIATION FACTOR 6
blastp_pdb 1g61_A 139 314 + 176 Gaps:5 78.51 228 38.55 4e-25 mol:protein length:228 TRANSLATION INITIATION FACTOR 6
blastp_uniprot_sprot sp|Q9M060|IF62_ARATH 17 335 + 319 Gaps:17 99.18 245 87.65 3e-156 Eukaryotic translation initiation factor 6-2 OS Arabidopsis thaliana GN EIF6-2 PE 2 SV 1
blastp_uniprot_sprot sp|O55135|IF6_MOUSE 21 333 + 313 Gaps:16 96.73 245 72.15 7e-125 Eukaryotic translation initiation factor 6 OS Mus musculus GN Eif6 PE 1 SV 2
blastp_uniprot_sprot sp|P56537|IF6_HUMAN 21 333 + 313 Gaps:16 96.73 245 71.73 2e-124 Eukaryotic translation initiation factor 6 OS Homo sapiens GN EIF6 PE 1 SV 1
blastp_uniprot_sprot sp|Q3KRD8|IF6_RAT 21 333 + 313 Gaps:16 96.73 245 71.73 4e-124 Eukaryotic translation initiation factor 6 OS Rattus norvegicus GN Eif6 PE 2 SV 1
blastp_uniprot_sprot sp|Q12522|IF6_YEAST 17 334 + 318 Gaps:18 98.78 245 73.14 1e-123 Eukaryotic translation initiation factor 6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TIF6 PE 1 SV 1
blastp_uniprot_sprot sp|Q9TU47|IF6_BOVIN 21 333 + 313 Gaps:14 96.73 245 71.73 4e-123 Eukaryotic translation initiation factor 6 OS Bos taurus GN EIF6 PE 2 SV 2
blastp_uniprot_sprot sp|Q6GR45|IF6_XENLA 21 333 + 313 Gaps:16 96.73 245 72.15 4e-123 Eukaryotic translation initiation factor 6 OS Xenopus laevis GN eif6 PE 2 SV 1
blastp_uniprot_sprot sp|Q59L13|IF6_CANAL 17 334 + 318 Gaps:17 98.78 245 70.66 8e-123 Eukaryotic translation initiation factor 6 OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN TIF6 PE 3 SV 1
blastp_uniprot_sprot sp|A4RSQ6|IF6_OSTLU 20 335 + 316 Gaps:17 97.96 245 70.42 2e-122 Eukaryotic translation initiation factor 6 OS Ostreococcus lucimarinus (strain CCE9901) GN EIF6 PE 3 SV 2
blastp_uniprot_sprot sp|O94476|IF6_SCHPO 20 334 + 315 Gaps:16 97.54 244 72.27 6e-121 Eukaryotic translation initiation factor 6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tif6 PE 3 SV 1
rpsblast_cdd gnl|CDD|185471 20 334 + 315 Gaps:29 97.57 247 72.61 1e-119 PTZ00136 PTZ00136 eukaryotic translation initiation factor 6-like protein Provisional.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 95 335 241 PTHR10784 none none IPR002769
PANTHER 95 335 241 PTHR10784:SF0 none none none
SUPERFAMILY 19 96 78 SSF55909 none none none
Gene3D 96 314 219 G3DSA:3.75.10.10 none none none
Gene3D 19 95 77 G3DSA:3.75.10.10 none none none
SMART 93 294 202 SM00654 none translation initiation factor 6 IPR002769
SUPERFAMILY 95 314 220 SSF55909 none none none
TIGRFAM 95 314 220 TIGR00323 none eIF-6: putative translation initiation factor eIF-6 IPR002769
Pfam 19 96 78 PF01912 none eIF-6 family IPR002769
Pfam 95 294 200 PF01912 none eIF-6 family IPR002769

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting