Protein : Qrob_P0354530.2 Q. robur
Protein Identifier  ? Qrob_P0354530.2 Organism . Name  Quercus robur
Score  55.3 Score Type  egn
Protein Description  (M=2) K12847 - U4/U6.U5 tri-snRNP-associated protein 2 Code Enzyme  EC:3.4.19.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 449  
Kegg Orthology  K12847
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0036459 ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_030360 4 448 + 445 Gaps:3 80.07 557 86.32 0.0 Ubiquitin C-terminal hydrolases superfamily protein
blastp_kegg lcl|rcu:RCOM_0670010 4 448 + 445 Gaps:2 79.89 557 87.87 0.0 ubiquitin specific protease 39 and snrnp assembly factor putative (EC:3.1.2.15)
blastp_kegg lcl|csv:101224038 4 448 + 445 Gaps:8 79.82 550 89.75 0.0 U4/U6.U5 tri-snRNP-associated protein 2-like
blastp_kegg lcl|csv:101218920 4 448 + 445 Gaps:8 79.82 550 89.52 0.0 U4/U6.U5 tri-snRNP-associated protein 2-like
blastp_kegg lcl|gmx:100792642 4 448 + 445 Gaps:1 76.24 585 87.89 0.0 U4/U6.U5 tri-snRNP-associated protein 2-like
blastp_kegg lcl|cmo:103501728 4 448 + 445 Gaps:8 79.82 550 89.29 0.0 U4/U6.U5 tri-snRNP-associated protein 2-like
blastp_kegg lcl|pvu:PHAVU_007G152400g 4 448 + 445 Gaps:1 78.52 568 87.44 0.0 hypothetical protein
blastp_kegg lcl|gmx:100792529 4 448 + 445 Gaps:6 78.33 563 88.66 0.0 U4/U6.U5 tri-snRNP-associated protein 2-like
blastp_kegg lcl|cam:101506337 4 448 + 445 Gaps:1 79.93 558 87.22 0.0 U4/U6.U5 tri-snRNP-associated protein 2-like
blastp_kegg lcl|cic:CICLE_v10004667mg 4 448 + 445 Gaps:7 79.42 554 87.73 0.0 hypothetical protein
blastp_pdb 2y6e_F 111 446 + 336 Gaps:52 95.91 367 27.27 6e-21 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_E 111 446 + 336 Gaps:52 95.91 367 27.27 6e-21 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_D 111 446 + 336 Gaps:52 95.91 367 27.27 6e-21 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_C 111 446 + 336 Gaps:52 95.91 367 27.27 6e-21 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_B 111 446 + 336 Gaps:52 95.91 367 27.27 6e-21 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_A 111 446 + 336 Gaps:52 95.91 367 27.27 6e-21 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 3nhe_A 112 445 + 334 Gaps:41 95.69 348 27.03 1e-18 mol:protein length:348 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2ibi_A 112 445 + 334 Gaps:41 89.04 374 27.33 1e-18 mol:protein length:374 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2hd5_A 112 445 + 334 Gaps:41 92.76 359 27.03 1e-18 mol:protein length:359 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2y5b_E 112 448 + 337 Gaps:57 94.59 370 26.00 5e-16 mol:protein length:370 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21
blastp_uniprot_sprot sp|Q53GS9|SNUT2_HUMAN 4 446 + 443 Gaps:23 77.88 565 52.50 3e-151 U4/U6.U5 tri-snRNP-associated protein 2 OS Homo sapiens GN USP39 PE 1 SV 2
blastp_uniprot_sprot sp|Q3TIX9|SNUT2_MOUSE 4 446 + 443 Gaps:23 78.01 564 52.50 6e-151 U4/U6.U5 tri-snRNP-associated protein 2 OS Mus musculus GN Usp39 PE 2 SV 2
blastp_uniprot_sprot sp|Q5R761|SNUT2_PONAB 4 446 + 443 Gaps:27 77.88 565 52.73 6e-150 U4/U6.U5 tri-snRNP-associated protein 2 OS Pongo abelii GN USP39 PE 2 SV 1
blastp_uniprot_sprot sp|Q9USR2|UBP10_SCHPO 4 446 + 443 Gaps:32 86.25 502 43.42 1e-114 Probable mRNA-splicing protein ubp10 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ubp10 PE 3 SV 1
blastp_uniprot_sprot sp|P43589|SAD1_YEAST 5 448 + 444 Gaps:77 91.29 448 32.52 1e-43 Pre-mRNA-splicing factor SAD1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SAD1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y6I4|UBP3_HUMAN 13 448 + 436 Gaps:96 93.08 520 26.24 1e-21 Ubiquitin carboxyl-terminal hydrolase 3 OS Homo sapiens GN USP3 PE 1 SV 2
blastp_uniprot_sprot sp|Q91W36|UBP3_MOUSE 13 448 + 436 Gaps:96 93.08 520 26.03 1e-20 Ubiquitin carboxyl-terminal hydrolase 3 OS Mus musculus GN Usp3 PE 2 SV 1
blastp_uniprot_sprot sp|O57429|UBP2_CHICK 106 445 + 340 Gaps:33 94.96 357 25.96 4e-20 Ubiquitin carboxyl-terminal hydrolase 2 OS Gallus gallus GN USP2 PE 2 SV 1
blastp_uniprot_sprot sp|O75604|UBP2_HUMAN 112 445 + 334 Gaps:41 55.04 605 27.33 2e-17 Ubiquitin carboxyl-terminal hydrolase 2 OS Homo sapiens GN USP2 PE 1 SV 2
blastp_uniprot_sprot sp|O88623|UBP2_MOUSE 112 445 + 334 Gaps:39 54.32 613 27.93 3e-17 Ubiquitin carboxyl-terminal hydrolase 2 OS Mus musculus GN Usp2 PE 1 SV 2

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 114 447 334 PS50235 none Ubiquitin specific protease (USP) domain profile. IPR028889
ProSiteProfiles 11 72 62 PS50271 none Zinc finger UBP-type profile. IPR001607
PANTHER 4 448 445 PTHR24619:SF122 none none none
SMART 12 61 50 SM00290 none Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger IPR001607
Gene3D 11 88 78 G3DSA:3.30.40.10 none none IPR013083
SUPERFAMILY 4 86 83 SSF57850 none none none
PANTHER 4 448 445 PTHR24619 none none none
SUPERFAMILY 111 250 140 SSF54001 none none none
SUPERFAMILY 278 446 169 SSF54001 none none none
Pfam 13 74 62 PF02148 none Zn-finger in ubiquitin-hydrolases and other protein IPR001607
Pfam 114 444 331 PF00443 none Ubiquitin carboxyl-terminal hydrolase IPR001394

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting