Protein : Qrob_P0354010.2 Q. robur
Protein Identifier  ? Qrob_P0354010.2 Organism . Name  Quercus robur
Score  29.2 Score Type  egn
Protein Description  (M=2) PTHR31081:SF2 - UREIDE PERMEASE 1-RELATED (PTHR31081:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 452  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0071705 nitrogen compound transport The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101513655 54 451 + 398 Gaps:66 93.93 428 75.12 0.0 ureide permease 2-like
blastp_kegg lcl|tcc:TCM_011542 29 451 + 423 Gaps:70 91.76 461 71.39 0.0 Ureide permease 1 isoform 4
blastp_kegg lcl|mtr:MTR_5g045520 55 451 + 397 Gaps:66 99.75 402 73.32 0.0 Ureide permease
blastp_kegg lcl|pop:POPTR_0008s09510g 55 451 + 397 Gaps:65 100.00 404 72.28 0.0 POPTRDRAFT_421134 hypothetical protein
blastp_kegg lcl|cam:101514412 55 451 + 397 Gaps:67 100.00 400 73.00 0.0 ureide permease 1-like
blastp_kegg lcl|pper:PRUPE_ppa006701mg 55 451 + 397 Gaps:68 100.00 399 72.43 0.0 hypothetical protein
blastp_kegg lcl|fve:101311562 55 451 + 397 Gaps:72 100.00 401 71.57 0.0 ureide permease 2-like
blastp_kegg lcl|pmum:103342065 55 451 + 397 Gaps:70 100.00 403 70.97 0.0 ureide permease 2-like
blastp_kegg lcl|sot:102595306 55 451 + 397 Gaps:64 100.00 407 71.50 0.0 ureide permease 2-like
blastp_kegg lcl|rcu:RCOM_1620850 55 451 + 397 Gaps:75 100.00 406 70.94 0.0 Ureide permease putative
blastp_uniprot_sprot sp|Q9ZPR7|UPS1_ARATH 55 451 + 397 Gaps:77 100.00 390 71.54 4e-178 Ureide permease 1 OS Arabidopsis thaliana GN UPS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZQ89|UPS2_ARATH 55 451 + 397 Gaps:69 100.00 398 68.59 5e-177 Ureide permease 2 OS Arabidopsis thaliana GN UPS2 PE 2 SV 2
blastp_uniprot_sprot sp|Q41706|UPSA3_VIGUN 56 427 + 372 Gaps:69 99.73 376 64.80 1e-161 Probable ureide permease A3 (Fragment) OS Vigna unguiculata GN A3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZQ88|UPS4_ARATH 55 451 + 397 Gaps:66 100.00 401 63.59 4e-161 Ureide permease 4 OS Arabidopsis thaliana GN UPS4 PE 2 SV 2
blastp_uniprot_sprot sp|Q93Z75|UPS5_ARATH 48 451 + 404 Gaps:70 98.79 413 62.01 9e-159 Ureide permease 5 OS Arabidopsis thaliana GN UPS5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPR6|UPS3_ARATH 55 297 + 243 Gaps:57 100.00 256 65.62 2e-102 Ureide permease 3 OS Arabidopsis thaliana GN UPS3 PE 2 SV 2
rpsblast_cdd gnl|CDD|191696 68 377 + 310 Gaps:44 100.00 336 69.05 1e-144 pfam07168 Ureide_permease Ureide permease. Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen transport compounds in plants that are not able to fix nitrogen. This family represents ureide permease a transporter of a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds including allantoin uric acid and xanthine it has 10 putative transmembrane domains with a large cytosolic central domain containing a 'Walker A' motif. Ureide permease is likely to transport other purine degradation products when nitrogen sources are low. Transport is dependent on glucose and a proton gradient. The family is found in bacteria plants and yeast.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 346 373 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 62 84 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 47 377 331 PTHR31081:SF2 none none IPR030189
Phobius 327 345 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 145 377 233 PF07168 none Ureide permease IPR009834
Phobius 446 451 6 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 283 302 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 374 425 52 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 161 181 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 19 61 43 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 303 326 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 85 95 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 96 115 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 182 258 77 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 402 451 50 PTHR31081:SF2 none none IPR030189
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 426 445 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 116 134 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 135 152 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 259 282 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 153 160 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 402 451 50 PTHR31081 none none none
PANTHER 47 377 331 PTHR31081 none none none

6 Localization

Analysis Start End Length
TMHMM 161 183 22
TMHMM 299 321 22
TMHMM 257 279 22
TMHMM 426 448 22
TMHMM 62 84 22
TMHMM 101 118 17

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting