7 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005525 | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
| GO:0007017 | microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
| GO:0003924 | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. |
| GO:0043234 | protein complex | A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. |
| GO:0051258 | protein polymerization | The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. |
| GO:0005874 | microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. |
| GO:0005200 | structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. |
43 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|csv:101220108 | 1 | 430 | + | 430 | Gaps:15 | 99.10 | 445 | 90.70 | 0.0 | tubulin beta-1 chain-like |
| blastp_kegg | lcl|cmo:103502193 | 1 | 433 | + | 433 | Gaps:14 | 100.00 | 445 | 90.11 | 0.0 | tubulin beta chain-like |
| blastp_kegg | lcl|sita:101776854 | 1 | 428 | + | 428 | Gaps:13 | 98.88 | 446 | 89.80 | 0.0 | tubulin beta-2 chain-like |
| blastp_kegg | lcl|pop:POPTR_0001s46870g | 1 | 419 | + | 419 | Gaps:13 | 97.08 | 445 | 91.44 | 0.0 | POPTRDRAFT_708103 hypothetical protein |
| blastp_kegg | lcl|pxb:103950576 | 1 | 423 | + | 423 | Gaps:13 | 97.10 | 449 | 90.83 | 0.0 | tubulin beta chain-like |
| blastp_kegg | lcl|mdm:103428326 | 1 | 423 | + | 423 | Gaps:13 | 97.10 | 449 | 90.37 | 0.0 | tubulin beta chain-like |
| blastp_kegg | lcl|mdm:103424612 | 1 | 423 | + | 423 | Gaps:13 | 97.10 | 449 | 90.83 | 0.0 | tubulin beta chain-like |
| blastp_kegg | lcl|pop:POPTR_0015s04560g | 1 | 416 | + | 416 | Gaps:13 | 96.62 | 444 | 91.84 | 0.0 | POPTRDRAFT_835113 hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0011s16520g | 1 | 418 | + | 418 | Gaps:13 | 96.85 | 445 | 91.42 | 0.0 | tubulin beta chain family protein |
| blastp_kegg | lcl|pmum:103321244 | 1 | 426 | + | 426 | Gaps:15 | 98.22 | 449 | 90.02 | 0.0 | tubulin beta chain-like |
| blastp_pdb | 3iz0_B | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 beta tubulin Chain B from PDB 1JFF |
| blastp_pdb | 3edl_G | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 Beta tubulin |
| blastp_pdb | 3edl_B | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 Beta tubulin |
| blastp_pdb | 3dco_B | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 Bovine Beta Tubulin |
| blastp_pdb | 2xrp_G | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_E | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_C | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_A | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2wbe_B | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2p4n_B | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 81.59 | 0.0 | mol:protein length:445 Tubulin beta chain |
| blastp_uniprot_sprot | sp|P18025|TBB1_MAIZE | 1 | 416 | + | 416 | Gaps:13 | 96.19 | 446 | 90.68 | 0.0 | Tubulin beta-1 chain OS Zea mays GN TUBB1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZPN9|TBB2_ELEIN | 1 | 424 | + | 424 | Gaps:13 | 97.54 | 448 | 90.85 | 0.0 | Tubulin beta-2 chain OS Eleusine indica GN TUBB2 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q40665|TBB3_ORYSJ | 1 | 416 | + | 416 | Gaps:13 | 96.19 | 446 | 91.38 | 0.0 | Tubulin beta-3 chain OS Oryza sativa subsp. japonica GN TUBB3 PE 1 SV 2 |
| blastp_uniprot_sprot | sp|Q41783|TBB6_MAIZE | 1 | 416 | + | 416 | Gaps:13 | 96.19 | 446 | 91.38 | 0.0 | Tubulin beta-6 chain OS Zea mays GN TUBB6 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZPN7|TBB4_ELEIN | 1 | 416 | + | 416 | Gaps:13 | 96.19 | 446 | 91.38 | 0.0 | Tubulin beta-4 chain OS Eleusine indica GN TUBB4 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZPN8|TBB3_ELEIN | 1 | 416 | + | 416 | Gaps:13 | 96.19 | 446 | 91.14 | 0.0 | Tubulin beta-3 chain OS Eleusine indica GN TUBB3 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P45960|TBB4_ORYSJ | 1 | 416 | + | 416 | Gaps:13 | 95.97 | 447 | 91.38 | 0.0 | Tubulin beta-4 chain OS Oryza sativa subsp. japonica GN TUBB4 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q43697|TBB5_MAIZE | 1 | 416 | + | 416 | Gaps:13 | 96.40 | 445 | 91.38 | 0.0 | Tubulin beta-5 chain OS Zea mays GN TUBB5 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q43594|TBB1_ORYSJ | 1 | 416 | + | 416 | Gaps:13 | 95.97 | 447 | 91.38 | 0.0 | Tubulin beta-1 chain OS Oryza sativa subsp. japonica GN TUBB1 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P37832|TBB7_ORYSJ | 1 | 416 | + | 416 | Gaps:13 | 96.62 | 444 | 90.68 | 0.0 | Tubulin beta-7 chain OS Oryza sativa subsp. japonica GN TUBB7 PE 1 SV 2 |
31 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| SMART | 233 | 370 | 138 | SM00865 | none | Tubulin/FtsZ family, C-terminal domain | IPR018316 |
| Pfam | 248 | 369 | 122 | PF03953 | none | Tubulin C-terminal domain | IPR018316 |
| SUPERFAMILY | 231 | 416 | 186 | SSF55307 | none | none | IPR008280 |
| Gene3D | 1 | 250 | 250 | G3DSA:3.40.50.1440 | none | none | IPR003008 |
| PANTHER | 1 | 428 | 428 | PTHR11588 | none | none | IPR000217 |
| Gene3D | 361 | 416 | 56 | G3DSA:1.10.287.600 | none | none | IPR023123 |
| Gene3D | 251 | 360 | 110 | G3DSA:3.30.1330.20 | none | none | IPR018316 |
| Pfam | 3 | 209 | 207 | PF00091 | none | Tubulin/FtsZ family, GTPase domain | IPR003008 |
| SMART | 47 | 231 | 185 | SM00864 | none | Tubulin/FtsZ family, GTPase domain | IPR003008 |
| PRINTS | 10 | 30 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 163 | 176 | 14 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 357 | 385 | 29 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 119 | 137 | 19 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 93 | 117 | 25 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 177 | 197 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 138 | 159 | 22 | PR01161 | none | Tubulin signature | IPR000217 |
| ProSitePatterns | 127 | 133 | 7 | PS00227 | none | Tubulin subunits alpha, beta, and gamma signature. | IPR017975 |
| SUPERFAMILY | 1 | 230 | 230 | SSF52490 | none | none | IPR003008 |
| PRINTS | 199 | 211 | 13 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 232 | 245 | 14 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 399 | 417 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 41 | 58 | 18 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 217 | 226 | 10 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 364 | 375 | 12 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 316 | 330 | 15 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 252 | 268 | 17 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 298 | 316 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 334 | 357 | 24 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PANTHER | 1 | 428 | 428 | PTHR11588:SF66 | none | none | none |
| Coils | 395 | 416 | 22 | Coil | none | none | none |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2004_QTL5_peak_Bud_burst_A4 | Qrob_Chr10 | 10 | s_1C8OKQ_688 | v_12844_707 | 25,6 | 13,9 | 39,9 | lod | 2,7 | 6,1 |
| Bourran2_2002_QTL13_peak_Bud_burst_3P | Qrob_Chr10 | 10 | s_1B1AG7_637 | s_1A3A1N_709 | 19,44 | 0 | 49,44 | lod | 3 | 5,6 |
| Bourran2_2002_QTL15_peak_Bud_burst_A4 | Qrob_Chr10 | 10 | v_7579_71 | s_1ATZMJ_189 | 23,94 | 0 | 43,64 | lod | 3,7 | 5,4 |
| Bourran2_2014_vSeqBC_A4 | Qrob_Chr10 | 10 | s_1BAM4E_1326 | s_1C0HD0_1012 | 36,88 | 7,71 | 46,03 | lod | 2,6164 | 7,3 |
| Champenoux_2015_nPriLBD_3P | Qrob_Chr10 | 10 | v_15000_157 | v_15000_310 | 15,68 | 15,9 | 15,91 | lod | 2.4 | 5.5 |
