Protein : Qrob_P0350890.2 Q. robur
Protein Identifier  ? Qrob_P0350890.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) PTHR10668:SF4 - PHYTOENE DEHYDROGENASE Code Enzyme  EC:1.1.3.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 590  
Kegg Orthology  K17756
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0046577 long-chain-alcohol oxidase activity Catalysis of the reaction: 2 long-chain alcohol + O2 = 2 long-chain aldehyde + 2 H2O.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10004403mg 7 580 + 574 none 77.15 744 71.78 0.0 hypothetical protein
blastp_kegg lcl|fve:101306323 5 580 + 576 Gaps:2 75.56 765 72.66 0.0 long-chain-alcohol oxidase FAO1-like
blastp_kegg lcl|cit:102618577 5 580 + 576 none 77.42 744 71.88 0.0 long-chain-alcohol oxidase FAO1-like
blastp_kegg lcl|cic:CICLE_v10004405mg 7 580 + 574 none 77.15 744 71.25 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_020935 5 582 + 578 none 77.07 750 71.11 0.0 Alcohol oxidase putative isoform 4
blastp_kegg lcl|pmum:103324068 5 587 + 583 Gaps:1 77.76 751 73.46 0.0 long-chain-alcohol oxidase FAO1
blastp_kegg lcl|vvi:100249518 5 584 + 580 none 78.27 741 73.10 0.0 long-chain-alcohol oxidase FAO1-like
blastp_kegg lcl|pop:POPTR_0010s07980g 5 582 + 578 none 77.79 743 73.18 0.0 POPTRDRAFT_768875 alcohol oxidase-related family protein
blastp_kegg lcl|pper:PRUPE_ppa021498mg 5 582 + 578 Gaps:1 80.31 721 72.88 0.0 hypothetical protein
blastp_kegg lcl|pxb:103965648 5 582 + 578 Gaps:6 77.97 749 72.26 0.0 long-chain-alcohol oxidase FAO1
blastp_uniprot_sprot sp|B5WWZ8|FAO1_LOTJA 5 582 + 578 Gaps:4 77.70 749 67.87 0.0 Long-chain-alcohol oxidase FAO1 OS Lotus japonicus GN FAO1 PE 1 SV 1
blastp_uniprot_sprot sp|B5WWZ9|FAO2_LOTJA 5 582 + 578 Gaps:8 77.33 750 66.03 0.0 Long-chain-alcohol oxidase FAO2 OS Lotus japonicus GN FAO2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW56|FAO3_ARATH 5 580 + 576 Gaps:7 77.88 746 67.64 0.0 Long-chain-alcohol oxidase FAO3 OS Arabidopsis thaliana GN FAO3 PE 1 SV 1
blastp_uniprot_sprot sp|Q94BP3|FAO4B_ARATH 5 584 + 580 Gaps:6 78.34 748 61.60 0.0 Long-chain-alcohol oxidase FAO4B OS Arabidopsis thaliana GN FAO4B PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZWB9|FAO1_ARATH 5 582 + 578 Gaps:7 76.65 758 56.45 0.0 Long-chain-alcohol oxidase FAO1 OS Arabidopsis thaliana GN FAO1 PE 3 SV 2
blastp_uniprot_sprot sp|O65709|FAO4A_ARATH 7 582 + 576 Gaps:41 81.40 726 47.72 6e-154 Long-chain-alcohol oxidase FAO4A OS Arabidopsis thaliana GN FAO4A PE 3 SV 2
blastp_uniprot_sprot sp|Q11157|Y492_MYCTU 76 573 + 498 Gaps:41 75.20 629 30.87 1e-35 Uncharacterized GMC-type oxidoreductase Rv0492c/MT0511/MT0512 OS Mycobacterium tuberculosis GN Rv0492c PE 3 SV 2
blastp_uniprot_sprot sp|P55582|Y4NJ_RHISN 73 579 + 507 Gaps:58 94.85 505 29.44 8e-32 Uncharacterized GMC-type oxidoreductase y4nJ OS Rhizobium sp. (strain NGR234) GN NGR_a02320 PE 3 SV 1
blastp_uniprot_sprot sp|Q2MF66|LIVQ_STRLV 78 580 + 503 Gaps:111 91.58 546 25.80 7e-15 6'''-hydroxyparomomycin C oxidase OS Streptomyces lividus GN livQ PE 1 SV 1
rpsblast_cdd gnl|CDD|109776 124 345 + 222 Gaps:10 100.00 218 46.79 8e-70 pfam00732 GMC_oxred_N GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
rpsblast_cdd gnl|CDD|32458 74 578 + 505 Gaps:84 97.97 542 20.72 6e-33 COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|203202 438 572 + 135 Gaps:16 85.61 139 38.66 7e-22 pfam05199 GMC_oxred_C GMC oxidoreductase. This domain found associated with pfam00732.
rpsblast_cdd gnl|CDD|188485 430 580 + 151 Gaps:32 25.67 487 40.00 5e-07 TIGR03970 Rv0697 dehydrogenase Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system) and are proposed to be uniform in function.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 1 585 585 PIRSF028937 "MetaCyc:PWY-2724" none IPR012400
PANTHER 20 578 559 PTHR10668:SF4 none none none
Gene3D 511 579 69 G3DSA:3.50.50.60 none none none
Gene3D 456 457 2 G3DSA:3.50.50.60 none none none
Gene3D 239 345 107 G3DSA:3.50.50.60 none none none
Gene3D 75 194 120 G3DSA:3.50.50.60 none none none
Pfam 436 571 136 PF05199 none GMC oxidoreductase IPR007867
Pfam 79 345 267 PF00732 none GMC oxidoreductase IPR000172
SUPERFAMILY 74 347 274 SSF51905 none none none
SUPERFAMILY 517 580 64 SSF51905 none none none
PANTHER 20 578 559 PTHR10668 none none none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting