Protein : Qrob_P0350130.2 Q. robur
Protein Identifier  ? Qrob_P0350130.2 Organism . Name  Quercus robur
Protein Description  (M=5) K03013 - DNA-directed RNA polymerases I, II, and III subunit RPABC1 Alias (in v1)  Qrob_P0392280.1
Code Enzyme  EC:2.7.7.6 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 205  
Kegg Orthology  K03013
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_039669 5 204 + 200 Gaps:3 97.60 208 60.10 9e-83 DNA-directed RNA polymerase II putative isoform 1
blastp_kegg lcl|vvi:100259318 2 204 + 203 Gaps:1 99.03 206 54.90 1e-74 DNA-directed RNA polymerases I II and III subunit RPABC1-like
blastp_kegg lcl|pper:PRUPE_ppa024345mg 5 204 + 200 Gaps:1 97.57 206 54.73 3e-74 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa011542mg 5 204 + 200 Gaps:1 97.57 206 55.22 4e-74 hypothetical protein
blastp_kegg lcl|pmum:103331533 5 204 + 200 Gaps:1 97.57 206 54.73 7e-74 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_kegg lcl|cmo:103492579 5 204 + 200 Gaps:2 97.58 207 56.44 9e-74 DNA-directed RNA polymerases II and IV subunit 5A
blastp_kegg lcl|cic:CICLE_v10009504mg 5 204 + 200 Gaps:1 97.57 206 55.22 9e-74 hypothetical protein
blastp_kegg lcl|cit:102629940 5 204 + 200 Gaps:1 97.57 206 55.22 9e-74 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_kegg lcl|csv:101217931 5 204 + 200 Gaps:2 97.58 207 56.44 1e-73 DNA-directed RNA polymerases I II and III subunit RPABC1-like
blastp_kegg lcl|pmum:103331534 5 204 + 200 Gaps:1 97.57 206 54.23 1e-73 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_pdb 3h0g_Q 1 204 + 204 Gaps:6 100.00 210 39.05 1e-43 mol:protein length:210 DNA-directed RNA polymerases I II and III s
blastp_pdb 3h0g_E 1 204 + 204 Gaps:6 100.00 210 39.05 1e-43 mol:protein length:210 DNA-directed RNA polymerases I II and III s
blastp_pdb 4a93_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3m_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3l_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3k_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3j_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3i_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3g_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3f_E 7 204 + 198 Gaps:11 96.28 215 37.68 1e-38 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_uniprot_sprot sp|O81098|RPB5A_ARATH 1 204 + 204 Gaps:1 100.00 205 50.73 5e-71 DNA-directed RNA polymerases II and IV subunit 5A OS Arabidopsis thaliana GN NRPB5A PE 1 SV 1
blastp_uniprot_sprot sp|Q9FJL8|RP5L1_ARATH 5 204 + 200 Gaps:5 97.62 210 48.29 7e-64 DNA-directed RNA polymerase subunit 5-like protein 1 OS Arabidopsis thaliana GN NRPB5L1 PE 3 SV 1
blastp_uniprot_sprot sp|A8XGH1|RPAB1_CAEBR 9 204 + 196 Gaps:6 95.73 211 47.03 4e-56 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis briggsae GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9N5K2|RPAB1_CAEEL 9 204 + 196 Gaps:6 95.73 211 46.53 2e-55 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis elegans GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|B0BNE2|RPAB1_RAT 1 202 + 202 Gaps:6 99.05 210 42.79 3e-53 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Rattus norvegicus GN Polr2e PE 2 SV 1
blastp_uniprot_sprot sp|Q80UW8|RPAB1_MOUSE 1 202 + 202 Gaps:6 99.05 210 42.79 3e-53 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Mus musculus GN Polr2e PE 2 SV 1
blastp_uniprot_sprot sp|Q5R587|RPAB1_PONAB 1 202 + 202 Gaps:6 99.05 210 42.79 6e-53 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Pongo abelii GN POLR2E PE 2 SV 1
blastp_uniprot_sprot sp|P19388|RPAB1_HUMAN 1 202 + 202 Gaps:6 99.05 210 42.31 1e-51 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Homo sapiens GN POLR2E PE 1 SV 4
blastp_uniprot_sprot sp|Q2T9T3|RPAB1_BOVIN 1 202 + 202 Gaps:6 99.05 210 42.31 2e-51 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Bos taurus GN POLR2E PE 2 SV 1
blastp_uniprot_sprot sp|Q54EH2|RPAB1_DICDI 5 204 + 200 Gaps:10 99.49 197 45.92 7e-48 DNA-directed RNA polymerases I II and III subunit rpabc1 OS Dictyostelium discoideum GN polr2e PE 3 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 129 203 75 SSF55287 none none IPR000783
PANTHER 1 204 204 PTHR10535 none none none
Gene3D 132 203 72 G3DSA:3.90.940.20 none none IPR000783
SUPERFAMILY 5 132 128 SSF53036 none none IPR005571
ProDom 138 203 66 PD005155 none RNA POLYMERASE DNA-DIRECTED SUBUNIT NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION II H POLYPEPTIDE IPR000783
Pfam 131 204 74 PF01191 none RNA polymerase Rpb5, C-terminal domain IPR000783
PIRSF 1 204 204 PIRSF000747 none none IPR014381
ProSitePatterns 136 149 14 PS01110 none RNA polymerases H / 23 Kd subunits signature. IPR020608
Gene3D 4 131 128 G3DSA:3.40.1340.10 none none IPR005571
Pfam 1 88 88 PF03871 none RNA polymerase Rpb5, N-terminal domain IPR005571

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting