Protein : Qrob_P0347500.2 Q. robur
Protein Identifier  ? Qrob_P0347500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14849 - ribosomal RNA-processing protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 575  
Kegg Orthology  K14849
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0030688 preribosome, small subunit precursor A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102617850 13 573 + 561 Gaps:14 97.91 575 60.21 0.0 ribosomal RNA processing protein 1 homolog
blastp_kegg lcl|cic:CICLE_v10010385mg 13 573 + 561 Gaps:14 89.79 627 60.21 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_034656 11 573 + 563 Gaps:20 98.57 559 60.25 0.0 Ribosomal RNA processing protein 1 B putative
blastp_kegg lcl|cmo:103492297 12 559 + 548 Gaps:19 95.94 566 59.30 0.0 ribosomal RNA processing protein 1 homolog B
blastp_kegg lcl|mdm:103441957 5 572 + 568 Gaps:36 99.46 557 59.39 0.0 ribosomal RNA processing protein 1 homolog B-like
blastp_kegg lcl|vvi:100247924 16 573 + 558 Gaps:21 98.90 547 60.81 0.0 uncharacterized LOC100247924
blastp_kegg lcl|pmum:103323606 14 572 + 559 Gaps:35 95.10 572 61.21 0.0 ribosomal RNA processing protein 1 homolog
blastp_kegg lcl|pop:POPTR_0012s03340g 14 571 + 558 Gaps:35 97.06 545 58.03 0.0 POPTRDRAFT_806222 hypothetical protein
blastp_kegg lcl|pxb:103950491 5 572 + 568 Gaps:36 96.85 572 59.21 0.0 ribosomal RNA processing protein 1 homolog B-like
blastp_kegg lcl|csv:101227674 12 559 + 548 Gaps:15 95.94 566 57.64 0.0 uncharacterized LOC101227674
blastp_uniprot_sprot sp|Q91YK2|RRP1B_MOUSE 15 218 + 204 Gaps:8 29.01 724 34.29 2e-29 Ribosomal RNA processing protein 1 homolog B OS Mus musculus GN Rrp1b PE 2 SV 2
blastp_uniprot_sprot sp|P56182|RRP1_HUMAN 8 221 + 214 Gaps:17 47.07 461 33.64 2e-25 Ribosomal RNA processing protein 1 homolog A OS Homo sapiens GN RRP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q14684|RRP1B_HUMAN 15 218 + 204 Gaps:8 27.70 758 31.90 3e-25 Ribosomal RNA processing protein 1 homolog B OS Homo sapiens GN RRP1B PE 1 SV 3
blastp_uniprot_sprot sp|Q18674|RRP1_CAEEL 17 198 + 182 Gaps:6 46.35 397 31.52 8e-23 Ribosomal RNA processing protein 1 homolog OS Caenorhabditis elegans GN C47E12.7 PE 3 SV 2
blastp_uniprot_sprot sp|P56183|RRP1_MOUSE 8 226 + 219 Gaps:11 44.94 494 31.98 1e-22 Ribosomal RNA processing protein 1 homolog A OS Mus musculus GN Rrp1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9Y7M6|RRP1_SCHPO 13 180 + 168 Gaps:4 78.34 217 36.47 4e-22 Ribosomal RNA-processing protein 1 homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC9B6.07 PE 3 SV 1
blastp_uniprot_sprot sp|Q54WY5|RRP1_DICDI 43 287 + 245 Gaps:33 52.93 495 29.39 9e-22 Ribosomal RNA processing protein 1 homolog OS Dictyostelium discoideum GN rrp1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9VJZ7|RRP1L_DROME 15 218 + 204 Gaps:11 30.42 687 30.14 1e-21 Ribosomal RNA processing protein 1 homolog OS Drosophila melanogaster GN Nnp-1 PE 1 SV 1
rpsblast_cdd gnl|CDD|191423 13 217 + 205 Gaps:7 99.05 210 40.87 4e-57 pfam05997 Nop52 Nucleolar protein Nop52. Nop52 believed to be involved in the generation of 28S rRNA.
rpsblast_kog gnl|CDD|39114 13 218 + 206 Gaps:7 55.82 378 32.23 5e-34 KOG3911 KOG3911 KOG3911 Nucleolar protein NOP52/RRP1 [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 13 215 203 PF05997 none Nucleolar protein,Nop52 IPR010301
PANTHER 15 558 544 PTHR13026:SF0 none none none
PANTHER 15 558 544 PTHR13026 none none IPR010301

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting