Protein : Qrob_P0345540.2 Q. robur
Protein Identifier  ? Qrob_P0345540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR15141:SF38 - BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN-RELATED (PTHR15141:SF38) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 646  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102610276 1 641 + 641 Gaps:60 98.57 630 69.57 0.0 uncharacterized LOC102610276
blastp_kegg lcl|pop:POPTR_0003s12750g 1 645 + 645 Gaps:58 100.00 607 71.33 0.0 POPTRDRAFT_1074031 bromo-adjacent homology (BAH) domain-containing family protein
blastp_kegg lcl|pop:POPTR_0001s09380g 1 639 + 639 Gaps:59 99.84 611 70.49 0.0 POPTRDRAFT_1066903 bromo-adjacent homology (BAH) domain-containing family protein
blastp_kegg lcl|csv:101218620 1 644 + 644 Gaps:64 100.00 610 69.84 0.0 uncharacterized LOC101218620
blastp_kegg lcl|cmo:103482748 1 644 + 644 Gaps:63 100.00 613 69.17 0.0 uncharacterized LOC103482748
blastp_kegg lcl|vvi:100251356 1 645 + 645 Gaps:61 98.49 595 70.14 0.0 uncharacterized LOC100251356
blastp_kegg lcl|pper:PRUPE_ppa003066mg 1 645 + 645 Gaps:52 100.00 607 68.04 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G289400g 1 645 + 645 Gaps:57 100.00 614 65.96 0.0 hypothetical protein
blastp_kegg lcl|gmx:100787670 1 645 + 645 Gaps:64 100.00 611 66.61 0.0 FK506-binding protein 5-like
blastp_kegg lcl|pmum:103337496 1 645 + 645 Gaps:52 45.13 1345 68.04 0.0 uncharacterized LOC103337496
blastp_pdb 1w4s_A 100 198 + 99 Gaps:3 55.17 174 29.17 6e-07 mol:protein length:174 POLYBROMO 1 PROTEIN
blastp_uniprot_sprot sp|Q8BSQ9|PB1_MOUSE 88 198 + 111 Gaps:3 6.61 1634 28.70 3e-06 Protein polybromo-1 OS Mus musculus GN Pbrm1 PE 1 SV 4
blastp_uniprot_sprot sp|Q86U86|PB1_HUMAN 53 198 + 146 Gaps:6 8.64 1689 27.40 4e-06 Protein polybromo-1 OS Homo sapiens GN PBRM1 PE 1 SV 1
blastp_uniprot_sprot sp|Q90941|PB1_CHICK 100 198 + 99 Gaps:3 5.88 1633 29.17 6e-06 Protein polybromo-1 OS Gallus gallus GN PBRM1 PE 1 SV 1
rpsblast_cdd gnl|CDD|72853 93 239 + 147 Gaps:1 100.00 146 65.07 3e-63 cd04713 BAH_plant_3 BAH or Bromo Adjacent Homology domain plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|197726 112 230 + 119 Gaps:8 100.00 121 29.75 3e-18 smart00439 BAH Bromo adjacent homology domain.
rpsblast_cdd gnl|CDD|201789 111 229 + 119 Gaps:6 99.17 120 32.77 8e-17 pfam01426 BAH BAH domain. This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
rpsblast_cdd gnl|CDD|72847 110 230 + 121 Gaps:8 100.00 123 34.96 2e-15 cd04370 BAH BAH or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p) where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p) confirming the initial hypothesis that BAH plays a role in protein-protein interactions..
rpsblast_cdd gnl|CDD|72854 117 211 + 95 Gaps:3 76.03 121 34.78 4e-11 cd04714 BAH_BAHCC1 BAH or Bromo Adjacent Homology domain as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|203654 444 522 + 79 Gaps:2 70.43 115 33.33 6e-10 pfam07500 TFIIS_M Transcription factor S-II (TFIIS) central domain. Transcription elongation by RNA polymerase II is regulated by the general elongation factor TFIIS. This factor stimulates RNA polymerase II to transcribe through regions of DNA that promote the formation of stalled ternary complexes. TFIIS is composed of three structural domains termed I II and III. The two C-terminal domains (II and III) this domain and pfam01096 are required for transcription activity.
rpsblast_cdd gnl|CDD|128786 435 510 + 76 Gaps:6 74.51 102 30.26 7e-10 smart00510 TFS2M Domain in the central regions of transcription elongation factor S-II (and elsewhere).
rpsblast_cdd gnl|CDD|184359 264 306 + 43 Gaps:3 12.50 440 78.18 7e-09 PRK13875 PRK13875 conjugal transfer protein TrbL Provisional.
rpsblast_cdd gnl|CDD|72857 110 229 + 120 Gaps:15 98.35 121 28.57 7e-08 cd04717 BAH_polybromo BAH or Bromo Adjacent Homology domain as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_kog gnl|CDD|37097 63 608 + 546 Gaps:111 95.04 464 34.69 1e-76 KOG1886 KOG1886 KOG1886 BAH domain proteins [Transcription].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 111 230 120 SM00439 none Bromo adjacent homology domain IPR001025
SUPERFAMILY 439 501 63 SSF46942 none none IPR003618
Pfam 442 522 81 PF07500 none Transcription factor S-II (TFIIS), central domain IPR003618
ProSiteProfiles 111 230 120 PS51038 none BAH domain profile. IPR001025
PANTHER 66 259 194 PTHR15141 none none none
ProSiteProfiles 372 528 157 PS51321 none TFIIS central domain profile. IPR003618
PANTHER 295 495 201 PTHR15141 none none none
PANTHER 295 495 201 PTHR15141:SF38 none none none
PANTHER 66 259 194 PTHR15141:SF38 none none none
Pfam 112 228 117 PF01426 none BAH domain IPR001025
SMART 409 510 102 SM00510 none Domain in the central regions of transcription elongation factor S-II (and elsewhere) IPR017890
Gene3D 442 501 60 G3DSA:1.10.472.30 none none IPR003618

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting