Protein : Qrob_P0338910.2 Q. robur
Protein Identifier  ? Qrob_P0338910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02219 - cyclin-dependent kinase regulatory subunit CKS1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 89  
Kegg Orthology  K02219
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0007049 cell cycle The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_041571 1 88 + 88 none 100.00 88 97.73 5e-57 Cyclin-dependent kinases regulatory subunit 1
blastp_kegg lcl|rcu:RCOM_0475440 1 88 + 88 none 100.00 88 96.59 8e-57 Cyclin-dependent kinases regulatory subunit putative
blastp_kegg lcl|pvu:PHAVU_011G086900g 1 88 + 88 none 100.00 88 96.59 1e-56 hypothetical protein
blastp_kegg lcl|gmx:547737 1 88 + 88 none 100.00 88 96.59 1e-56 cyclin-dependent kinases regulatory subunit
blastp_kegg lcl|gmx:100786340 1 88 + 88 none 100.00 88 96.59 1e-56 cyclin-dependent kinases regulatory subunit 1-like
blastp_kegg lcl|aly:ARALYDRAFT_481712 1 88 + 88 Gaps:1 100.00 87 96.55 2e-54 CKS1 cdk-subunit 1
blastp_kegg lcl|pda:103710352 1 81 + 81 none 88.04 92 98.77 2e-53 cyclin-dependent kinases regulatory subunit 1
blastp_kegg lcl|eus:EUTSA_v10017487mg 1 88 + 88 Gaps:1 100.00 87 94.25 8e-53 hypothetical protein
blastp_kegg lcl|mus:103975782 1 81 + 81 none 87.10 93 97.53 8e-53 cyclin-dependent kinases regulatory subunit 1-like
blastp_kegg lcl|mus:103975779 1 81 + 81 none 87.10 93 97.53 8e-53 cyclin-dependent kinases regulatory subunit 1
blastp_pdb 1cks_C 3 77 + 75 none 94.94 79 69.33 1e-32 mol:protein length:79 CYCLIN-DEPENDENT KINASE SUBUNIT TYPE 2
blastp_pdb 1cks_B 3 77 + 75 none 94.94 79 69.33 1e-32 mol:protein length:79 CYCLIN-DEPENDENT KINASE SUBUNIT TYPE 2
blastp_pdb 1cks_A 3 77 + 75 none 94.94 79 69.33 1e-32 mol:protein length:79 CYCLIN-DEPENDENT KINASE SUBUNIT TYPE 2
blastp_pdb 2ast_C 3 71 + 69 none 100.00 69 71.01 3e-32 mol:protein length:69 Cyclin-dependent kinases regulatory subunit 1
blastp_pdb 2ass_C 3 71 + 69 none 100.00 69 71.01 3e-32 mol:protein length:69 Cyclin-dependent kinases regulatory subunit 1
blastp_pdb 1dkt_B 3 71 + 69 none 87.34 79 71.01 3e-32 mol:protein length:79 CYCLIN DEPENDENT KINASE SUBUNIT TYPE 1
blastp_pdb 1dkt_A 3 71 + 69 none 87.34 79 71.01 3e-32 mol:protein length:79 CYCLIN DEPENDENT KINASE SUBUNIT TYPE 1
blastp_pdb 1dks_B 3 71 + 69 none 87.34 79 71.01 3e-32 mol:protein length:79 CYCLIN DEPENDENT KINASE SUBUNIT TYPE 1
blastp_pdb 1dks_A 3 71 + 69 none 87.34 79 71.01 3e-32 mol:protein length:79 CYCLIN DEPENDENT KINASE SUBUNIT TYPE 1
blastp_pdb 1buh_B 3 71 + 69 none 87.34 79 71.01 3e-32 mol:protein length:79 PROTEIN (CKSHS1 HUMAN)
blastp_uniprot_sprot sp|Q9SJJ5|CKS2_ARATH 1 80 + 80 none 96.39 83 91.25 3e-50 Cyclin-dependent kinases regulatory subunit 2 OS Arabidopsis thaliana GN CKS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6PS57|CKS1_ORYSJ 1 73 + 73 none 81.11 90 97.26 5e-48 Cyclin-dependent kinases regulatory subunit 1 OS Oryza sativa subsp. japonica GN CKS1 PE 2 SV 1
blastp_uniprot_sprot sp|A2XCH8|CKS1_ORYSI 1 73 + 73 none 81.11 90 97.26 5e-48 Cyclin-dependent kinases regulatory subunit 1 OS Oryza sativa subsp. indica GN CKS1 PE 2 SV 1
blastp_uniprot_sprot sp|O23249|CKS1_ARATH 1 71 + 71 none 81.61 87 95.77 3e-46 Cyclin-dependent kinases regulatory subunit 1 OS Arabidopsis thaliana GN CKS1 PE 1 SV 1
blastp_uniprot_sprot sp|P55933|CKS1_PHYPO 4 69 + 66 none 78.57 84 78.79 3e-35 Probable cyclin-dependent kinases regulatory subunit OS Physarum polycephalum PE 1 SV 1
blastp_uniprot_sprot sp|P56390|CKS2_MOUSE 3 77 + 75 none 94.94 79 69.33 2e-32 Cyclin-dependent kinases regulatory subunit 2 OS Mus musculus GN Cks2 PE 2 SV 1
blastp_uniprot_sprot sp|Q24152|CKS1_DROME 4 70 + 67 none 90.54 74 70.15 2e-32 Cyclin-dependent kinases regulatory subunit OS Drosophila melanogaster GN Cks30A PE 3 SV 1
blastp_uniprot_sprot sp|P33552|CKS2_HUMAN 3 77 + 75 none 94.94 79 69.33 5e-32 Cyclin-dependent kinases regulatory subunit 2 OS Homo sapiens GN CKS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q2KJI1|CKS2_BOVIN 3 77 + 75 none 94.94 79 69.33 5e-32 Cyclin-dependent kinases regulatory subunit 2 OS Bos taurus GN CKS2 PE 3 SV 1
blastp_uniprot_sprot sp|P41384|CKS1_PATVU 3 74 + 72 none 94.74 76 66.67 6e-32 Cyclin-dependent kinases regulatory subunit OS Patella vulgata PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 1 82 82 SSF55637 none none IPR000789
Pfam 3 72 70 PF01111 none Cyclin-dependent kinase regulatory subunit IPR000789
PRINTS 40 54 15 PR00296 none Cyclin-dependent kinase regulatory subunit signature IPR000789
PRINTS 55 69 15 PR00296 none Cyclin-dependent kinase regulatory subunit signature IPR000789
PRINTS 3 17 15 PR00296 none Cyclin-dependent kinase regulatory subunit signature IPR000789
PRINTS 18 32 15 PR00296 none Cyclin-dependent kinase regulatory subunit signature IPR000789
ProSitePatterns 6 24 19 PS00944 none Cyclin-dependent kinases regulatory subunits signature 1. IPR000789
SMART 3 72 70 SM01084 none Cyclin-dependent kinase regulatory subunit IPR000789
PANTHER 3 83 81 PTHR23415 none none none
Gene3D 1 76 76 G3DSA:3.30.170.10 none none IPR000789

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting