Protein : Qrob_P0338800.2 Q. robur
Protein Identifier  ? Qrob_P0338800.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) PTHR11785//PTHR11785:SF237 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 730  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa005222mg 210 667 + 458 Gaps:2 97.03 472 77.51 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336731 208 667 + 460 Gaps:5 95.86 483 76.67 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|rcu:RCOM_0866340 209 666 + 458 Gaps:3 94.86 486 73.97 0.0 amino acid transporter putative
blastp_kegg lcl|tcc:TCM_001632 218 667 + 450 Gaps:1 84.77 532 75.83 0.0 Amino acid permease family protein
blastp_kegg lcl|cic:CICLE_v10000961mg 196 667 + 472 Gaps:9 95.48 487 73.98 0.0 hypothetical protein
blastp_kegg lcl|pxb:103955572 192 667 + 476 Gaps:10 85.05 555 74.15 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|sly:101247639 188 668 + 481 Gaps:3 90.94 530 69.92 0.0 probable polyamine transporter At1g31830-like
blastp_kegg lcl|mdm:103436816 208 667 + 460 Gaps:1 97.05 475 75.92 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|pop:POPTR_0003s10260g 213 668 + 456 Gaps:5 94.27 489 74.84 0.0 POPTRDRAFT_646369 hypothetical protein
blastp_kegg lcl|sot:102602998 221 668 + 448 Gaps:1 95.74 469 73.05 0.0 probable polyamine transporter At1g31830-like
blastp_pdb 3ncy_D 232 564 + 333 Gaps:22 75.28 445 22.09 5e-13 mol:protein length:445 AdiC
blastp_pdb 3ncy_C 232 564 + 333 Gaps:22 75.28 445 22.09 5e-13 mol:protein length:445 AdiC
blastp_pdb 3ncy_B 232 564 + 333 Gaps:22 75.28 445 22.09 5e-13 mol:protein length:445 AdiC
blastp_pdb 3ncy_A 232 564 + 333 Gaps:22 75.28 445 22.09 5e-13 mol:protein length:445 AdiC
blastp_pdb 3lrc_D 232 611 + 380 Gaps:54 88.09 445 23.47 4e-12 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_C 232 611 + 380 Gaps:54 88.09 445 23.47 4e-12 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_B 232 611 + 380 Gaps:54 88.09 445 23.47 4e-12 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_A 232 611 + 380 Gaps:54 88.09 445 23.47 4e-12 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrb_B 232 611 + 380 Gaps:54 88.09 445 23.47 4e-12 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrb_A 232 611 + 380 Gaps:54 88.09 445 23.47 4e-12 mol:protein length:445 Arginine/agmatine antiporter
blastp_uniprot_sprot sp|Q9FFL1|RMV1_ARATH 215 668 + 454 Gaps:6 93.88 490 68.91 0.0 Polyamine transporter RMV1 OS Arabidopsis thaliana GN RMV1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C6S5|PHSB_ARATH 214 668 + 455 Gaps:2 92.32 495 66.74 0.0 Probable polyamine transporter At1g31830 OS Arabidopsis thaliana GN At1g31830 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z8D0|PUT1_ORYSJ 210 672 + 463 Gaps:1 87.38 531 64.22 0.0 Polyamine transporter PUT1 OS Oryza sativa subsp. japonica GN PUT1 PE 1 SV 1
blastp_uniprot_sprot sp|A2X8M8|PUT1_ORYSI 210 672 + 463 Gaps:1 87.38 531 64.22 0.0 Polyamine transporter PUT1 OS Oryza sativa subsp. indica GN PUT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9C6S4|PHSA_ARATH 229 668 + 440 Gaps:1 91.49 482 63.72 0.0 Probable polyamine transporter At1g31820 OS Arabidopsis thaliana GN At1g31820 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LH39|PHSD_ARATH 211 664 + 454 Gaps:5 94.99 479 51.43 5e-160 Probable polyamine transporter At3g19553 OS Arabidopsis thaliana GN At3g19553 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LHN7|PHSC_ARATH 232 641 + 410 Gaps:5 85.98 478 47.93 3e-128 Probable polyamine transporter At3g13620 OS Arabidopsis thaliana GN At3g13620 PE 2 SV 1
blastp_uniprot_sprot sp|P60066|ADIC_SALTY 232 564 + 333 Gaps:22 75.28 445 22.09 2e-12 Arginine/agmatine antiporter OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN adiC PE 1 SV 1
blastp_uniprot_sprot sp|P60065|ADIC_SALTI 232 564 + 333 Gaps:22 75.28 445 22.09 2e-12 Arginine/agmatine antiporter OS Salmonella typhi GN adiC PE 3 SV 1
blastp_uniprot_sprot sp|P60064|ADIC_SHIFL 232 611 + 380 Gaps:54 88.09 445 23.47 2e-11 Arginine/agmatine antiporter OS Shigella flexneri GN adiC PE 3 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 285 295 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 213 714 502 PTHR11785 none none IPR002293
Phobius 313 338 26 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 255 259 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 629 649 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 395 413 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 365 370 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 371 394 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 251 638 388 PF13520 none Amino acid permease IPR002293
Phobius 234 254 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 435 445 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 495 513 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 624 628 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 600 623 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 339 364 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 465 494 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 213 714 502 PTHR11785:SF237 none none none
Phobius 514 542 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 446 464 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 589 599 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 414 434 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 569 588 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 296 312 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 543 563 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 650 729 80 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 260 284 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 564 568 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 233 233 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

10 Localization

Analysis Start End Length
TMHMM 261 283 22
TMHMM 235 254 19
TMHMM 298 320 22
TMHMM 601 623 22
TMHMM 447 469 22
TMHMM 628 646 18
TMHMM 371 393 22
TMHMM 540 559 19
TMHMM 564 586 22
TMHMM 339 361 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting