Protein : Qrob_P0338790.2 Q. robur
Protein Identifier  ? Qrob_P0338790.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR11785//PTHR11785:SF205 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 410  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0866340 11 405 + 395 Gaps:48 91.15 486 70.20 0.0 amino acid transporter putative
blastp_kegg lcl|pper:PRUPE_ppa005222mg 11 405 + 395 Gaps:48 93.86 472 69.75 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336731 11 405 + 395 Gaps:48 91.72 483 69.30 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|vvi:100249510 5 402 + 398 Gaps:47 93.68 475 68.76 0.0 uncharacterized LOC100249510
blastp_kegg lcl|tcc:TCM_001632 1 402 + 402 Gaps:48 84.59 532 69.11 0.0 Amino acid permease family protein
blastp_kegg lcl|sly:101247639 1 400 + 400 Gaps:58 86.42 530 65.72 0.0 probable polyamine transporter At1g31830-like
blastp_kegg lcl|sot:102597466 12 400 + 389 Gaps:48 93.38 468 70.25 0.0 probable polyamine transporter At1g31830-like
blastp_kegg lcl|cic:CICLE_v10000961mg 11 404 + 394 Gaps:48 90.76 487 68.55 0.0 hypothetical protein
blastp_kegg lcl|pxb:103955572 11 405 + 395 Gaps:48 79.82 555 68.85 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|sot:102602998 1 400 + 400 Gaps:58 97.65 469 65.50 0.0 probable polyamine transporter At1g31830-like
blastp_uniprot_sprot sp|Q9C6S5|PHSB_ARATH 12 403 + 392 Gaps:48 88.89 495 63.41 0.0 Probable polyamine transporter At1g31830 OS Arabidopsis thaliana GN At1g31830 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FFL1|RMV1_ARATH 11 402 + 392 Gaps:50 90.20 490 61.31 0.0 Polyamine transporter RMV1 OS Arabidopsis thaliana GN RMV1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6Z8D0|PUT1_ORYSJ 15 400 + 386 Gaps:48 81.73 531 60.37 3e-179 Polyamine transporter PUT1 OS Oryza sativa subsp. japonica GN PUT1 PE 1 SV 1
blastp_uniprot_sprot sp|A2X8M8|PUT1_ORYSI 15 400 + 386 Gaps:48 81.73 531 60.37 3e-179 Polyamine transporter PUT1 OS Oryza sativa subsp. indica GN PUT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9C6S4|PHSA_ARATH 12 399 + 388 Gaps:48 90.46 482 59.40 1e-165 Probable polyamine transporter At1g31820 OS Arabidopsis thaliana GN At1g31820 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LH39|PHSD_ARATH 16 401 + 386 Gaps:50 91.02 479 47.02 5e-124 Probable polyamine transporter At3g19553 OS Arabidopsis thaliana GN At3g19553 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LHN7|PHSC_ARATH 15 367 + 353 Gaps:49 84.10 478 43.03 1e-99 Probable polyamine transporter At3g13620 OS Arabidopsis thaliana GN At3g13620 PE 2 SV 1
blastp_uniprot_sprot sp|O07576|YHDG_BACSU 114 299 + 186 Gaps:20 43.01 465 24.00 2e-07 Uncharacterized amino acid permease YhdG OS Bacillus subtilis (strain 168) GN yhdG PE 2 SV 1
rpsblast_cdd gnl|CDD|205698 17 335 + 319 Gaps:51 85.18 425 20.44 8e-12 pfam13520 AA_permease_2 Amino acid permease.
rpsblast_cdd gnl|CDD|129987 85 299 + 215 Gaps:30 57.11 429 23.67 5e-10 TIGR00909 2A0306 amino acid transporter.
rpsblast_cdd gnl|CDD|183096 36 376 + 341 Gaps:75 90.34 445 19.40 1e-07 PRK11357 frlA putative fructoselysine transporter Provisional.
rpsblast_cdd gnl|CDD|30877 15 380 + 366 Gaps:46 88.41 466 20.39 1e-07 COG0531 PotE Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36501 15 397 + 383 Gaps:71 92.69 479 22.07 8e-60 KOG1287 KOG1287 KOG1287 Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36500 178 335 + 158 Gaps:15 29.42 554 22.09 5e-09 KOG1286 KOG1286 KOG1286 Amino acid transporters [Amino acid transport and metabolism].

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 33 41 9 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 28 32 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 197 215 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 155 196 42 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 132 136 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 63 112 50 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 290 310 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 32 32 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 17 27 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 379 409 31 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 346 350 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 15 392 378 PTHR11785:SF205 none none none
Phobius 113 131 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 15 392 378 PTHR11785 none none IPR002293
Phobius 137 154 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 42 62 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 16 16 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 351 378 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 85 390 306 PF13520 none Amino acid permease IPR002293
Phobius 216 289 74 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 311 321 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 322 345 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

8 Localization

Analysis Start End Length
TMHMM 105 127 22
TMHMM 200 222 22
TMHMM 242 264 22
TMHMM 353 375 22
TMHMM 134 156 22
TMHMM 290 312 22
TMHMM 40 62 22
TMHMM 321 343 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting