Protein : Qrob_P0338730.2 Q. robur
Protein Identifier  ? Qrob_P0338730.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) PTHR11785//PTHR11785:SF237 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 267  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_001632 5 266 + 262 Gaps:39 56.58 532 68.77 4e-135 Amino acid permease family protein
blastp_kegg lcl|pmum:103336731 5 266 + 262 Gaps:39 62.32 483 68.11 2e-130 probable polyamine transporter At1g31830
blastp_kegg lcl|rcu:RCOM_0866340 4 266 + 263 Gaps:39 62.14 486 65.23 2e-126 amino acid transporter putative
blastp_kegg lcl|cmo:103499237 5 266 + 262 Gaps:40 50.33 600 65.89 9e-126 probable polyamine transporter At1g31830
blastp_kegg lcl|cic:CICLE_v10000961mg 4 266 + 263 Gaps:40 62.22 487 65.02 2e-125 hypothetical protein
blastp_kegg lcl|sly:101256208 5 266 + 262 Gaps:39 58.33 516 65.12 2e-125 probable polyamine transporter At1g31830-like
blastp_kegg lcl|cam:101507564 4 266 + 263 Gaps:43 61.94 494 65.36 3e-125 probable polyamine transporter At1g31830-like
blastp_kegg lcl|sot:102604274 4 265 + 262 Gaps:39 62.58 481 64.12 3e-125 probable polyamine transporter At1g31830-like
blastp_kegg lcl|pper:PRUPE_ppa005222mg 18 266 + 249 Gaps:39 61.02 472 68.40 1e-124 hypothetical protein
blastp_kegg lcl|pda:103695935 4 266 + 263 Gaps:39 61.26 493 65.56 2e-123 probable polyamine transporter At1g31830
blastp_uniprot_sprot sp|Q9C6S5|PHSB_ARATH 9 266 + 258 Gaps:46 61.41 495 59.21 2e-112 Probable polyamine transporter At1g31830 OS Arabidopsis thaliana GN At1g31830 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z8D0|PUT1_ORYSJ 36 266 + 231 Gaps:20 47.27 531 63.35 9e-107 Polyamine transporter PUT1 OS Oryza sativa subsp. japonica GN PUT1 PE 1 SV 1
blastp_uniprot_sprot sp|A2X8M8|PUT1_ORYSI 36 266 + 231 Gaps:20 47.27 531 63.35 9e-107 Polyamine transporter PUT1 OS Oryza sativa subsp. indica GN PUT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FFL1|RMV1_ARATH 36 266 + 231 Gaps:22 51.63 490 62.85 4e-104 Polyamine transporter RMV1 OS Arabidopsis thaliana GN RMV1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C6S4|PHSA_ARATH 36 265 + 230 Gaps:20 51.87 482 62.00 3e-96 Probable polyamine transporter At1g31820 OS Arabidopsis thaliana GN At1g31820 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LHN7|PHSC_ARATH 36 265 + 230 Gaps:20 52.30 478 48.80 3e-73 Probable polyamine transporter At3g13620 OS Arabidopsis thaliana GN At3g13620 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LH39|PHSD_ARATH 36 265 + 230 Gaps:22 52.61 479 49.21 2e-70 Probable polyamine transporter At3g19553 OS Arabidopsis thaliana GN At3g19553 PE 3 SV 1
rpsblast_cdd gnl|CDD|205698 36 266 + 231 Gaps:34 60.94 425 21.24 3e-09 pfam13520 AA_permease_2 Amino acid permease.
rpsblast_cdd gnl|CDD|30877 27 266 + 240 Gaps:38 57.08 466 23.31 7e-08 COG0531 PotE Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36501 39 266 + 228 Gaps:34 54.28 479 21.54 2e-40 KOG1287 KOG1287 KOG1287 Amino acid transporters [Amino acid transport and metabolism].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 246 264 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 48 69 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 132 142 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 47 47 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 241 245 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 109 131 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 40 266 227 PTHR11785:SF237 none none none
Pfam 95 245 151 PF13520 none Amino acid permease IPR002293
Phobius 185 205 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 206 216 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 217 240 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 40 266 227 PTHR11785 none none IPR002293
Phobius 70 108 39 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 166 184 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 265 266 2 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 143 165 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

4 Localization

Analysis Start End Length
TMHMM 47 69 22
TMHMM 109 131 22
TMHMM 218 240 22
TMHMM 141 163 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting