Protein : Qrob_P0338720.2 Q. robur
Protein Identifier  ? Qrob_P0338720.2 Organism . Name  Quercus robur
Score  28.0 Score Type  egn
Protein Description  (M=6) PTHR11785//PTHR11785:SF237 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 488  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336731 1 481 + 481 none 99.59 483 83.37 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|tcc:TCM_001632 2 486 + 485 none 91.17 532 83.30 0.0 Amino acid permease family protein
blastp_kegg lcl|pper:PRUPE_ppa005222mg 16 487 + 472 none 100.00 472 84.11 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0866340 4 487 + 484 none 99.59 486 79.96 0.0 amino acid transporter putative
blastp_kegg lcl|cmo:103499237 2 486 + 485 Gaps:1 81.00 600 81.69 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|cic:CICLE_v10000961mg 4 485 + 482 Gaps:1 99.18 487 80.75 0.0 hypothetical protein
blastp_kegg lcl|pxb:103955572 2 481 + 480 Gaps:5 87.39 555 82.47 0.0 probable polyamine transporter At1g31830
blastp_kegg lcl|pop:POPTR_0003s10260g 4 487 + 484 Gaps:3 99.59 489 82.34 0.0 POPTRDRAFT_646369 hypothetical protein
blastp_kegg lcl|csv:101225567 16 486 + 471 Gaps:1 99.79 473 82.63 0.0 probable polyamine transporter At1g31830-like
blastp_kegg lcl|csv:101217286 16 486 + 471 Gaps:1 99.79 473 82.63 0.0 probable polyamine transporter At1g31830-like
blastp_pdb 3ncy_D 39 355 + 317 Gaps:26 72.13 445 24.30 2e-11 mol:protein length:445 AdiC
blastp_pdb 3ncy_C 39 355 + 317 Gaps:26 72.13 445 24.30 2e-11 mol:protein length:445 AdiC
blastp_pdb 3ncy_B 39 355 + 317 Gaps:26 72.13 445 24.30 2e-11 mol:protein length:445 AdiC
blastp_pdb 3ncy_A 39 355 + 317 Gaps:26 72.13 445 24.30 2e-11 mol:protein length:445 AdiC
blastp_pdb 3lrc_D 39 419 + 381 Gaps:61 88.09 445 24.49 1e-09 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_C 39 419 + 381 Gaps:61 88.09 445 24.49 1e-09 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_B 39 419 + 381 Gaps:61 88.09 445 24.49 1e-09 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_A 39 419 + 381 Gaps:61 88.09 445 24.49 1e-09 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrb_B 39 419 + 381 Gaps:61 88.09 445 24.49 1e-09 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrb_A 39 419 + 381 Gaps:61 88.09 445 24.49 1e-09 mol:protein length:445 Arginine/agmatine antiporter
blastp_uniprot_sprot sp|Q9C6S5|PHSB_ARATH 7 486 + 480 Gaps:7 98.38 495 73.10 0.0 Probable polyamine transporter At1g31830 OS Arabidopsis thaliana GN At1g31830 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z8D0|PUT1_ORYSJ 4 474 + 471 Gaps:3 88.89 531 69.70 0.0 Polyamine transporter PUT1 OS Oryza sativa subsp. japonica GN PUT1 PE 1 SV 1
blastp_uniprot_sprot sp|A2X8M8|PUT1_ORYSI 4 474 + 471 Gaps:3 88.89 531 69.70 0.0 Polyamine transporter PUT1 OS Oryza sativa subsp. indica GN PUT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FFL1|RMV1_ARATH 5 474 + 470 Gaps:6 95.51 490 70.09 0.0 Polyamine transporter RMV1 OS Arabidopsis thaliana GN RMV1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C6S4|PHSA_ARATH 36 486 + 451 none 93.57 482 70.95 0.0 Probable polyamine transporter At1g31820 OS Arabidopsis thaliana GN At1g31820 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LH39|PHSD_ARATH 21 482 + 462 Gaps:13 99.16 479 53.26 3e-176 Probable polyamine transporter At3g19553 OS Arabidopsis thaliana GN At3g19553 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LHN7|PHSC_ARATH 39 487 + 449 Gaps:3 93.72 478 47.10 7e-142 Probable polyamine transporter At3g13620 OS Arabidopsis thaliana GN At3g13620 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RKI7|S7A13_RAT 80 407 + 328 Gaps:40 70.98 479 24.12 1e-12 Solute carrier family 7 member 13 OS Rattus norvegicus GN Slc7a13 PE 2 SV 1
blastp_uniprot_sprot sp|P37034|Y1691_LEGPH 70 412 + 343 Gaps:53 80.17 464 26.88 2e-12 Uncharacterized transporter lpg1691 OS Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN lpg1691 PE 3 SV 2
blastp_uniprot_sprot sp|O34739|STET_BACSU 83 409 + 327 Gaps:20 76.03 438 27.03 1e-11 Serine/threonine exchanger SteT OS Bacillus subtilis (strain 168) GN steT PE 1 SV 1

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 436 454 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 203 253 51 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 67 86 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 118 122 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 174 178 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 39 483 445 PTHR11785 none none IPR002293
Phobius 41 61 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 87 97 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 408 430 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 277 287 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 98 117 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 155 173 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 62 66 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 455 487 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 47 437 391 PF13520 none Amino acid permease IPR002293
Phobius 288 305 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 351 371 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PIRSF 33 485 453 PIRSF006060 none none IPR002293
Phobius 397 407 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 372 376 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 179 202 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 144 154 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 377 396 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 123 143 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 306 350 45 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 431 435 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 254 276 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 40 40 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 39 483 445 PTHR11785:SF237 none none none

10 Localization

Analysis Start End Length
TMHMM 71 93 22
TMHMM 105 124 19
TMHMM 378 396 18
TMHMM 255 277 22
TMHMM 436 458 22
TMHMM 146 168 22
TMHMM 42 61 19
TMHMM 351 373 22
TMHMM 180 202 22
TMHMM 409 431 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting