Protein : Qrob_P0334200.2 Q. robur
Protein Identifier  ? Qrob_P0334200.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR11761:SF3 - 50S RIBOSOMAL PROTEIN L14 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 411  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241180 282 410 + 129 none 77.25 167 84.50 9e-70 50S ribosomal protein L14-like
blastp_kegg lcl|mus:103983529 274 410 + 137 none 81.07 169 74.45 3e-67 50S ribosomal protein HLP mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa012469mg 286 410 + 125 Gaps:2 75.60 168 85.83 2e-66 hypothetical protein
blastp_kegg lcl|pda:103710523 286 410 + 125 none 65.45 191 80.00 8e-64 50S ribosomal protein HLP mitochondrial
blastp_kegg lcl|cam:101505032 286 410 + 125 none 75.30 166 84.80 1e-62 50S ribosomal protein L14-like
blastp_kegg lcl|brp:103839624 286 410 + 125 Gaps:7 75.86 174 77.27 4e-62 50S ribosomal protein HLP mitochondrial-like
blastp_kegg lcl|aly:ARALYDRAFT_494358 286 410 + 125 Gaps:7 76.74 172 77.27 5e-62 hypothetical protein
blastp_kegg lcl|ath:AT5G46160 286 410 + 125 Gaps:7 76.74 172 76.52 6e-62 large subunit ribosomal protein L14
blastp_kegg lcl|cam:101495811 286 410 + 125 none 75.30 166 84.00 1e-61 50S ribosomal protein L14-like
blastp_kegg lcl|crb:CARUB_v10027145mg 286 410 + 125 Gaps:7 64.71 204 77.27 3e-61 hypothetical protein
blastp_pdb 3pyv_K 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3pyt_K 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3pyr_K 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3pyo_K 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3ms1_K 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3mrz_K 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3f1h_O 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3f1f_O 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3d5d_O 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3d5b_O 292 409 + 118 Gaps:2 98.36 122 49.17 2e-30 mol:protein length:122 50S ribosomal protein L14
blastp_uniprot_sprot sp|Q1RHN1|RL14_RICBR 292 409 + 118 Gaps:2 98.36 122 55.00 4e-36 50S ribosomal protein L14 OS Rickettsia bellii (strain RML369-C) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A8GVC4|RL14_RICB8 292 409 + 118 Gaps:2 98.36 122 55.00 4e-36 50S ribosomal protein L14 OS Rickettsia bellii (strain OSU 85-389) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q68W88|RL14_RICTY 292 409 + 118 Gaps:2 98.36 122 55.00 8e-36 50S ribosomal protein L14 OS Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZCR5|RL14_RICPR 292 409 + 118 Gaps:2 98.36 122 55.00 8e-36 50S ribosomal protein L14 OS Rickettsia prowazekii (strain Madrid E) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q4UMR9|RL14_RICFE 292 409 + 118 Gaps:2 98.36 122 55.83 1e-35 50S ribosomal protein L14 OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A8EZK6|RL14_RICCK 292 409 + 118 Gaps:2 98.36 122 55.83 1e-35 50S ribosomal protein L14 OS Rickettsia canadensis (strain McKiel) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|C4K2G9|RL14_RICPU 292 409 + 118 Gaps:2 98.36 122 55.00 3e-35 50S ribosomal protein L14 OS Rickettsia peacockii (strain Rustic) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q92GX6|RL14_RICCN 292 409 + 118 Gaps:2 98.36 122 55.00 3e-35 50S ribosomal protein L14 OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|C3PP97|RL14_RICAE 292 409 + 118 Gaps:2 98.36 122 55.00 3e-35 50S ribosomal protein L14 OS Rickettsia africae (strain ESF-5) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A8GPE0|RL14_RICAH 292 409 + 118 Gaps:2 98.36 122 55.00 4e-35 50S ribosomal protein L14 OS Rickettsia akari (strain Hartford) GN rplN PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 286 409 124 G3DSA:2.40.150.20 none none IPR023571
PANTHER 286 410 125 PTHR11761 none none IPR000218
Phobius 286 410 125 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 267 267 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 292 409 118 SSF50193 none none IPR023571
Pfam 292 409 118 PF00238 none Ribosomal protein L14p/L23e IPR000218
Phobius 268 285 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 292 409 118 TIGR01067 none rplN_bact: ribosomal protein uL14 IPR005745
PANTHER 286 410 125 PTHR11761:SF3 none none none

1 Localization

Analysis Start End Length
TMHMM 265 285 20

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting