3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| GO:0003690 | double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. |
| GO:0005739 | mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
12 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pmum:103339510 | 1 | 586 | + | 586 | Gaps:15 | 99.66 | 597 | 63.87 | 0.0 | uncharacterized LOC103339510 |
| blastp_kegg | lcl|pmum:103339431 | 1 | 586 | + | 586 | Gaps:2 | 99.66 | 588 | 62.29 | 0.0 | uncharacterized LOC103339431 |
| blastp_kegg | lcl|mdm:103424332 | 1 | 586 | + | 586 | Gaps:12 | 99.67 | 600 | 62.04 | 0.0 | uncharacterized LOC103424332 |
| blastp_kegg | lcl|pper:PRUPE_ppa023810mg | 6 | 586 | + | 581 | Gaps:15 | 99.33 | 594 | 63.73 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|mdm:103454336 | 1 | 586 | + | 586 | Gaps:12 | 99.67 | 600 | 61.71 | 0.0 | uncharacterized LOC103454336 |
| blastp_kegg | lcl|tcc:TCM_024876 | 1 | 581 | + | 581 | Gaps:11 | 98.63 | 586 | 63.84 | 0.0 | Mitochondrial transcription termination factor family protein putative isoform 1 |
| blastp_kegg | lcl|vvi:100241837 | 1 | 586 | + | 586 | Gaps:2 | 99.83 | 589 | 60.88 | 0.0 | uncharacterized LOC100241837 |
| blastp_kegg | lcl|pper:PRUPEppa1027152mg | 1 | 586 | + | 586 | Gaps:6 | 100.00 | 588 | 63.10 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|pxb:103940743 | 1 | 586 | + | 586 | Gaps:12 | 99.67 | 600 | 61.04 | 0.0 | uncharacterized LOC103940743 |
| blastp_kegg | lcl|pxb:103964872 | 1 | 586 | + | 586 | Gaps:12 | 99.67 | 600 | 61.04 | 0.0 | uncharacterized LOC103964872 |
| rpsblast_cdd | gnl|CDD|178738 | 216 | 574 | + | 359 | Gaps:77 | 65.71 | 487 | 23.44 | 1e-09 | PLN03196 PLN03196 MOC1-like protein Provisional. |
| rpsblast_kog | gnl|CDD|36481 | 188 | 543 | + | 356 | Gaps:38 | 82.81 | 413 | 19.59 | 6e-10 | KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only]. |
9 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 175 | 339 | 165 | PF02536 | none | mTERF | IPR003690 |
| Pfam | 426 | 563 | 138 | PF02536 | none | mTERF | IPR003690 |
| SMART | 191 | 221 | 31 | SM00733 | none | Mitochondrial termination factor repeats | IPR003690 |
| SMART | 480 | 511 | 32 | SM00733 | none | Mitochondrial termination factor repeats | IPR003690 |
| SMART | 330 | 361 | 32 | SM00733 | none | Mitochondrial termination factor repeats | IPR003690 |
| SMART | 226 | 257 | 32 | SM00733 | none | Mitochondrial termination factor repeats | IPR003690 |
| SMART | 512 | 545 | 34 | SM00733 | none | Mitochondrial termination factor repeats | IPR003690 |
| PANTHER | 80 | 587 | 508 | PTHR13068:SF7 | none | none | none |
| PANTHER | 80 | 587 | 508 | PTHR13068 | none | none | none |
12 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
| Bourran2_2014_nP_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 7,9 | 0,09 | 30,09 | lod | 2,3636 | 5 |
| Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
| Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
| Bourran2_2014_nEpiBC_A4 | Qrob_Chr07 | 7 | s_2FI9D9_500 | s_1AXDMJ_325 | 12,26 | 0 | 34,9 | lod | 2,2306 | 6,1 |
| Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
| Bourran2_2002_QTL10_peak_Bud_burst_3P | Qrob_Chr07 | 7 | s_1CAWP_311 | s_1BEZ9M_461 | 7,5 | 0 | 21,5 | lod | 3,7 | 6,3 |
| Bourran2_2014_nPriBD*_A4 | Qrob_Chr07 | 7 | s_1A7UI0_596 | s_1A3H6S_352 | 8,02 | 0 | 20,53 | lod | 4,1062 | 10,8 |
