Protein : Qrob_P0332180.2 Q. robur
Protein Identifier  ? Qrob_P0332180.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PF00488//PF01541 - MutS domain V // GIY-YIG catalytic domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 317  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000475mg 1 306 + 306 Gaps:1 26.66 1144 75.74 6e-154 hypothetical protein
blastp_kegg lcl|pxb:103933658 1 315 + 315 Gaps:4 27.46 1140 74.44 4e-152 DNA mismatch repair protein MSH1 mitochondrial
blastp_kegg lcl|fve:101291235 1 315 + 315 Gaps:3 24.55 1279 71.66 5e-144 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|vvi:100266612 1 305 + 305 Gaps:15 26.75 1144 72.55 2e-142 uncharacterized LOC100266612
blastp_kegg lcl|pop:POPTR_0010s07550g 1 314 + 314 Gaps:15 26.81 1130 70.96 2e-139 POPTRDRAFT_885217 chloroplast mutator family protein
blastp_kegg lcl|mtr:MTR_1g045670 1 306 + 306 none 24.88 1230 67.97 9e-138 DNA mismatch repair protein mutS
blastp_kegg lcl|cit:102611883 1 306 + 306 Gaps:13 26.82 1137 69.84 1e-135 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|cmo:103483539 1 316 + 316 Gaps:5 27.89 1151 66.04 2e-135 DNA mismatch repair protein MSH1 mitochondrial
blastp_kegg lcl|csv:101228304 1 316 + 316 Gaps:28 42.96 675 71.03 3e-135 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|cam:101504596 1 306 + 306 Gaps:1 26.91 1141 65.47 7e-135 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_pdb 2o8f_B 1 115 + 115 Gaps:8 12.04 1022 30.89 2e-08 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8e_B 1 115 + 115 Gaps:8 12.04 1022 30.89 2e-08 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8d_B 1 115 + 115 Gaps:8 12.04 1022 30.89 2e-08 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8c_B 1 115 + 115 Gaps:8 12.04 1022 30.89 2e-08 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8b_B 1 115 + 115 Gaps:8 12.04 1022 30.89 2e-08 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 1wbb_B 1 115 + 115 Gaps:1 14.50 800 29.31 6e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1wbb_A 1 115 + 115 Gaps:1 14.50 800 29.31 6e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1wb9_B 1 115 + 115 Gaps:1 14.50 800 29.31 6e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1wb9_A 1 115 + 115 Gaps:1 14.50 800 29.31 6e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1wbd_B 1 115 + 115 Gaps:1 14.50 800 29.31 6e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_uniprot_sprot sp|Q84LK0|MSH1_ARATH 1 316 + 316 Gaps:27 25.85 1118 64.71 1e-116 DNA mismatch repair protein MSH1 mitochondrial OS Arabidopsis thaliana GN MSH1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5FLX5|MUTS_LACAC 1 164 + 164 Gaps:6 19.16 856 31.71 2e-14 DNA mismatch repair protein MutS OS Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q8R9D0|MUTS2_THETN 1 124 + 124 Gaps:5 15.32 790 39.67 8e-14 Endonuclease MutS2 OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|C1A4A9|MUTS2_GEMAT 7 116 + 110 Gaps:2 13.19 819 36.11 4e-12 Endonuclease MutS2 OS Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q5UYI1|MUTS2_HALMA 1 122 + 122 Gaps:1 12.99 947 31.71 6e-12 DNA mismatch repair protein MutS 2 OS Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN mutS2 PE 3 SV 2
blastp_uniprot_sprot sp|O51125|MUTS2_BORBU 1 121 + 121 Gaps:4 15.26 780 38.66 8e-12 Endonuclease MutS2 OS Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|A8YTH9|MUTS_LACH4 1 136 + 136 Gaps:3 16.20 858 31.65 2e-11 DNA mismatch repair protein MutS OS Lactobacillus helveticus (strain DPC 4571) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|A8MHU4|MUTS2_ALKOO 1 160 + 160 Gaps:23 19.87 790 31.85 3e-11 Endonuclease MutS2 OS Alkaliphilus oremlandii (strain OhILAs) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|Q49WR1|MUTS2_STAS1 1 118 + 118 Gaps:4 14.83 782 35.34 3e-11 Endonuclease MutS2 OS Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN mutS2 PE 3 SV 1
blastp_uniprot_sprot sp|P61668|MUTS_LACJO 1 118 + 118 Gaps:1 13.89 857 32.77 4e-11 DNA mismatch repair protein MutS OS Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN mutS PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 208 208 PTHR11361 none none none
ProSitePatterns 15 31 17 PS00486 none DNA mismatch repair proteins mutS family signature. IPR000432
SUPERFAMILY 4 118 115 SSF52540 none none IPR027417
PANTHER 1 208 208 PTHR11361:SF82 none none none
SMART 1 120 120 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
Pfam 1 118 118 PF00488 none MutS domain V IPR000432
SUPERFAMILY 225 287 63 SSF82771 none none IPR000305
Pfam 226 286 61 PF01541 none GIY-YIG catalytic domain IPR000305
Gene3D 1 119 119 G3DSA:3.40.50.300 none none IPR027417

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting