Protein : Qrob_P0332170.2 Q. robur
Protein Identifier  ? Qrob_P0332170.2 Organism . Name  Quercus robur
Score  32.0 Score Type  egn
Protein Description  (M=2) KOG0217//KOG0218//KOG0219//KOG0221 - Mismatch repair ATPase MSH6 (MutS family) [Replication recombination and repair]. // Mismatch repair MSH3 [Replication recombination and repair]. // Mismatch repair ATPase MSH2 (MutS family) [Replication recombination and repair]. // Mismatch repair ATPase MSH5 (MutS family) [Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 366  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103933658 16 340 + 325 none 28.51 1140 83.38 0.0 DNA mismatch repair protein MSH1 mitochondrial
blastp_kegg lcl|rcu:RCOM_1217070 16 340 + 325 none 34.69 937 82.77 0.0 ATP binding protein putative
blastp_kegg lcl|pmum:103323794 16 340 + 325 none 29.23 1112 82.15 0.0 DNA mismatch repair protein MSH1 mitochondrial
blastp_kegg lcl|pop:POPTR_0010s07550g 16 340 + 325 none 28.76 1130 82.15 0.0 POPTRDRAFT_885217 chloroplast mutator family protein
blastp_kegg lcl|tcc:TCM_021024 16 340 + 325 none 29.28 1110 82.15 0.0 MUTL protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000475mg 16 340 + 325 Gaps:1 28.50 1144 81.90 0.0 hypothetical protein
blastp_kegg lcl|vvi:100266612 16 340 + 325 none 28.41 1144 80.62 0.0 uncharacterized LOC100266612
blastp_kegg lcl|fve:101291235 16 340 + 325 none 25.41 1279 81.54 0.0 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|cit:102611883 16 340 + 325 Gaps:7 27.97 1137 83.02 1e-177 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|csv:101228304 11 340 + 330 Gaps:3 49.33 675 74.77 8e-172 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_pdb 1ewr_B 268 340 + 73 Gaps:1 11.40 649 44.59 4e-09 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1ewr_A 268 340 + 73 Gaps:1 11.40 649 44.59 4e-09 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1fw6_B 268 340 + 73 Gaps:1 9.64 768 44.59 5e-09 mol:protein length:768 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1fw6_A 268 340 + 73 Gaps:1 9.64 768 44.59 5e-09 mol:protein length:768 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1nne_B 268 340 + 73 Gaps:1 9.67 765 44.59 5e-09 mol:protein length:765 DNA Mismatch Repair protein MutS
blastp_pdb 1nne_A 268 340 + 73 Gaps:1 9.67 765 44.59 5e-09 mol:protein length:765 DNA Mismatch Repair protein MutS
blastp_pdb 1ewq_B 268 340 + 73 Gaps:1 9.67 765 44.59 5e-09 mol:protein length:765 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1ewq_A 268 340 + 73 Gaps:1 9.67 765 44.59 5e-09 mol:protein length:765 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 2o8e_A 159 338 + 180 Gaps:21 17.67 934 30.30 4e-06 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thz_A 159 338 + 180 Gaps:21 17.67 934 30.30 4e-06 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_uniprot_sprot sp|Q84LK0|MSH1_ARATH 16 340 + 325 Gaps:1 29.16 1118 74.23 2e-165 DNA mismatch repair protein MSH1 mitochondrial OS Arabidopsis thaliana GN MSH1 PE 1 SV 1
blastp_uniprot_sprot sp|A5UZK7|MUTS_ROSS1 156 340 + 185 Gaps:22 16.31 1085 31.64 9e-10 DNA mismatch repair protein MutS OS Roseiflexus sp. (strain RS-1) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q88UZ7|MUTS_LACPL 216 355 + 140 Gaps:17 14.62 896 35.88 1e-09 DNA mismatch repair protein MutS OS Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q048Y4|MUTS_LACDB 265 354 + 90 Gaps:3 10.86 856 36.56 1e-09 DNA mismatch repair protein MutS OS Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|P61668|MUTS_LACJO 216 353 + 138 Gaps:16 15.17 857 33.85 1e-09 DNA mismatch repair protein MutS OS Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q1G938|MUTS_LACDA 265 354 + 90 Gaps:3 10.86 856 35.48 2e-09 DNA mismatch repair protein MutS OS Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|A7NPT5|MUTS_ROSCS 156 340 + 185 Gaps:26 16.27 1088 30.51 2e-09 DNA mismatch repair protein MutS OS Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q045Q5|MUTS_LACGA 190 353 + 164 Gaps:26 19.37 857 31.33 3e-09 DNA mismatch repair protein MutS OS Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q9KAC0|MUTS_BACHD 262 340 + 79 Gaps:3 9.48 865 36.59 4e-09 DNA mismatch repair protein MutS OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|P26359|MSH3_SCHPO 262 340 + 79 Gaps:4 8.36 993 38.55 4e-09 DNA mismatch repair protein msh3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN msh3 PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 199 216 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 269 341 73 PF00488 none MutS domain V IPR000432
Gene3D 250 340 91 G3DSA:3.40.50.300 none none IPR027417
Phobius 217 365 149 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 18 340 323 PTHR11361:SF82 none none none
Coils 66 87 22 Coil none none none
Phobius 1 198 198 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 18 340 323 PTHR11361 none none none
SUPERFAMILY 269 339 71 SSF52540 none none IPR027417

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting