3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005524 | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| GO:0006298 | mismatch repair | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. |
| GO:0030983 | mismatched DNA binding | Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. |
12 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|tcc:TCM_021024 | 1 | 170 | + | 170 | Gaps:34 | 18.02 | 1110 | 64.50 | 6e-77 | MUTL protein isoform 1 |
| blastp_kegg | lcl|rcu:RCOM_1217070 | 1 | 170 | + | 170 | Gaps:34 | 21.56 | 937 | 64.36 | 3e-75 | ATP binding protein putative |
| blastp_kegg | lcl|eus:EUTSA_v10002376mg | 1 | 170 | + | 170 | Gaps:33 | 18.09 | 1122 | 60.59 | 8e-74 | hypothetical protein |
| blastp_kegg | lcl|aly:ARALYDRAFT_479946 | 1 | 170 | + | 170 | Gaps:35 | 17.85 | 1115 | 62.31 | 8e-73 | hypothetical protein |
| blastp_kegg | lcl|cit:102611883 | 1 | 170 | + | 170 | Gaps:36 | 17.77 | 1137 | 62.87 | 6e-72 | DNA mismatch repair protein MSH1 mitochondrial-like |
| blastp_kegg | lcl|cic:CICLE_v10004190mg | 1 | 170 | + | 170 | Gaps:36 | 27.67 | 730 | 62.38 | 7e-72 | hypothetical protein |
| blastp_kegg | lcl|pper:PRUPE_ppa000475mg | 1 | 170 | + | 170 | Gaps:36 | 17.48 | 1144 | 62.50 | 5e-70 | hypothetical protein |
| blastp_kegg | lcl|pxb:103933658 | 1 | 170 | + | 170 | Gaps:35 | 17.46 | 1140 | 62.31 | 5e-70 | DNA mismatch repair protein MSH1 mitochondrial |
| blastp_kegg | lcl|pop:POPTR_0010s07550g | 1 | 170 | + | 170 | Gaps:37 | 17.61 | 1130 | 63.32 | 7e-70 | POPTRDRAFT_885217 chloroplast mutator family protein |
| blastp_kegg | lcl|vvi:100266612 | 1 | 170 | + | 170 | Gaps:35 | 17.40 | 1144 | 59.80 | 5e-69 | uncharacterized LOC100266612 |
| blastp_uniprot_sprot | sp|Q84LK0|MSH1_ARATH | 1 | 170 | + | 170 | Gaps:35 | 17.80 | 1118 | 59.80 | 5e-70 | DNA mismatch repair protein MSH1 mitochondrial OS Arabidopsis thaliana GN MSH1 PE 1 SV 1 |
| rpsblast_kog | gnl|CDD|35438 | 119 | 181 | + | 63 | Gaps:5 | 5.87 | 1125 | 36.36 | 5e-11 | KOG0217 KOG0217 KOG0217 Mismatch repair ATPase MSH6 (MutS family) [Replication recombination and repair]. |
5 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Gene3D | 102 | 171 | 70 | G3DSA:3.40.1170.10 | none | none | IPR016151 |
| PANTHER | 37 | 170 | 134 | PTHR11361 | none | none | none |
| SUPERFAMILY | 102 | 172 | 71 | SSF55271 | none | none | IPR016151 |
| Pfam | 102 | 171 | 70 | PF01624 | none | MutS domain I | IPR007695 |
| PANTHER | 37 | 170 | 134 | PTHR11361:SF82 | none | none | none |
16 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Champenoux_2015_nPriLBD_3P | Qrob_Chr10 | 10 | v_15000_157 | v_15000_310 | 15,68 | 15,9 | 15,91 | lod | 2.4 | 5.5 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_nLBD*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,25 | 0 | 35,55 | lod | 2,5951 | 6 |
| Bourran2_2014_nP*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,19 | 0 | 31,97 | lod | 2,8472 | 6 |
| Bourran2_2002_QTL11_peak_Bud_burst_A4 | Qrob_Chr06 | 6 | s_1C41PA_791 | s_1AM1AV_1141 | 19,17 | 0 | 34,57 | lod | 2,3 | 2,9 |
| Bourran2_2014_aSeqBC_3P | Qrob_Chr06 | 6 | v_506_189 | v_686_77 | 30,72 | 13,58 | 43,48 | lod | 2,2746 | 6,3 |
| Bourran2_2014_aSeqBC*_A4 | Qrob_Chr06 | 6 | s_2F5MK3_712 | v_444_355 | 27,13 | 14,86 | 39,46 | lod | 3,7847 | 9,8 |
| Bourran2_2014_nEpis*_3P | Qrob_Chr08 | 8 | s_1DA4QW_688 | s_1DNI7D_820 | 17,96 | 0 | 37,75 | lod | 2,9745 | 7,5 |
| Bourran2_2014_nEpis*_A4 | Qrob_Chr07 | 7 | v_12400_446 | s_1BPEBU_1211 | 6,93 | 0 | 15,13 | lod | 4,7411 | 11 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_nLBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 37,41 | 9,8 | 50,1 | lod | 1,9524 | 4,1 |
| Bourran2_2014_nPriBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,51 | 3,36 | 51,86 | lod | 1,6747 | 3,9 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_vEpiBC_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 37,55 | 14,41 | 50,01 | lod | 1,7882 | 4,8 |
| Champenoux_2015_nEpis_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,53 | 25,47 | 27,72 | lod | 4.4 | 8.9 |
| Champenoux_2015_nP_3P | Qrob_Chr06 | 6 | s_1A386O_228 | s_1AYZFS_603 | 27,03 | 26,47 | 27,34 | lod | 2.8 | 7.2 |
