Protein : Qrob_P0329760.2 Q. robur
Protein Identifier  ? Qrob_P0329760.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=16) 3.2.1.67 - Galacturan 1,4-alpha-galacturonidase. Code Enzyme  EC:3.2.1.67
Gene Prediction Quality  validated Protein length 

Sequence

Length: 394  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103498752 24 391 + 368 Gaps:6 85.51 428 60.93 5e-156 exopolygalacturonase-like
blastp_kegg lcl|pop:POPTR_0019s09500g 6 389 + 384 Gaps:7 97.96 393 58.96 6e-156 hypothetical protein
blastp_kegg lcl|mdm:103442964 3 391 + 389 Gaps:4 98.25 400 55.73 5e-155 exopolygalacturonase-like
blastp_kegg lcl|pxb:103927064 1 391 + 391 Gaps:6 99.50 399 56.42 6e-155 exopolygalacturonase-like
blastp_kegg lcl|pxb:103955042 3 391 + 389 Gaps:4 98.25 400 55.73 6e-155 exopolygalacturonase-like
blastp_kegg lcl|mdm:103412274 1 391 + 391 Gaps:6 99.50 399 56.42 2e-154 exopolygalacturonase-like
blastp_kegg lcl|tcc:TCM_002289 4 391 + 388 Gaps:7 97.04 405 54.20 8e-154 Polygalacturonase
blastp_kegg lcl|pop:POPTR_0519s00220g 6 389 + 384 Gaps:7 97.96 393 58.18 3e-153 hypothetical protein
blastp_kegg lcl|tcc:TCM_002294 4 391 + 388 Gaps:7 76.31 515 55.47 5e-153 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|mdm:103453494 1 391 + 391 Gaps:6 99.50 399 55.92 1e-152 exopolygalacturonase-like
blastp_pdb 1ib4_B 111 381 + 271 Gaps:22 78.17 339 31.70 4e-19 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 111 381 + 271 Gaps:22 78.17 339 31.70 4e-19 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 111 381 + 271 Gaps:22 78.17 339 31.70 4e-19 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1nhc_F 85 381 + 297 Gaps:27 83.93 336 31.21 4e-19 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 85 381 + 297 Gaps:27 83.93 336 31.21 4e-19 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 85 381 + 297 Gaps:27 83.93 336 31.21 4e-19 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 85 381 + 297 Gaps:27 83.93 336 31.21 4e-19 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 85 381 + 297 Gaps:27 83.93 336 31.21 4e-19 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 85 381 + 297 Gaps:27 83.93 336 31.21 4e-19 mol:protein length:336 Polygalacturonase I
blastp_pdb 1hg8_A 67 347 + 281 Gaps:37 88.83 349 26.13 1e-17 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 24 386 + 363 Gaps:3 96.55 377 56.59 4e-148 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 1 390 + 390 Gaps:10 97.30 407 51.52 3e-140 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 1 390 + 390 Gaps:10 97.30 407 51.52 1e-139 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 37 390 + 354 Gaps:3 98.07 362 54.93 5e-137 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|P35337|PGLR_BRANA 1 389 + 389 Gaps:7 97.23 397 51.30 8e-136 Polygalacturonase OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 12 390 + 379 Gaps:7 95.45 396 50.79 8e-135 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q40312|PGLR_MEDSA 5 389 + 385 Gaps:16 92.40 421 52.19 3e-131 Polygalacturonase OS Medicago sativa PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 54 390 + 337 Gaps:1 76.13 444 48.82 1e-115 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 25 389 + 365 Gaps:4 90.00 410 46.61 9e-113 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1
blastp_uniprot_sprot sp|P35338|PGLR2_MAIZE 25 389 + 365 Gaps:4 90.00 410 46.34 5e-112 Exopolygalacturonase OS Zea mays GN PG9 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 5 390 386 PTHR31375 none none none
Phobius 22 393 372 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 10 390 381 SSF51126 none none IPR011050
PANTHER 5 390 386 PTHR31375:SF2 none none none
SMART 173 199 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 200 221 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 283 304 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 253 274 22 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 17 21 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 11 391 381 G3DSA:2.160.20.10 none none IPR012334
Pfam 55 377 323 PF00295 none Glycosyl hydrolases family 28 IPR000743

1 Localization

Analysis Start End Length
SignalP_EUK 1 21 20

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting