Protein : Qrob_P0328480.2 Q. robur
Protein Identifier  ? Qrob_P0328480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10357:SF115 - ISOAMYLASE 2, CHLOROPLASTIC (PTHR10357:SF115) Code Enzyme  EC:3.2.1.68
Gene Prediction Quality  validated Protein length 

Sequence

Length: 888  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0043169 cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103333796 1 882 + 882 Gaps:2 99.89 883 70.52 0.0 isoamylase 2 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa001199mg 1 882 + 882 Gaps:2 99.89 883 70.07 0.0 hypothetical protein
blastp_kegg lcl|pxb:103947557 1 882 + 882 Gaps:15 99.89 870 69.28 0.0 isoamylase 2 chloroplastic-like
blastp_kegg lcl|mdm:103449035 1 880 + 880 Gaps:15 99.66 870 69.55 0.0 isoamylase 2 chloroplastic-like
blastp_kegg lcl|vvi:100244186 1 882 + 882 Gaps:7 99.66 882 68.15 0.0 isoamylase 2 chloroplastic-like
blastp_kegg lcl|pxb:103939342 1 882 + 882 Gaps:16 99.88 869 69.24 0.0 isoamylase 2 chloroplastic-like
blastp_kegg lcl|fve:101293068 7 882 + 876 Gaps:16 99.54 868 68.17 0.0 isoamylase 2 chloroplastic-like
blastp_kegg lcl|mdm:103432444 1 882 + 882 Gaps:15 99.89 870 68.47 0.0 isoamylase 2 chloroplastic-like
blastp_kegg lcl|tcc:TCM_004448 1 882 + 882 Gaps:24 99.65 867 68.29 0.0 Debranching enzyme 1
blastp_kegg lcl|cit:102626207 1 882 + 882 Gaps:16 99.66 889 66.48 0.0 isoamylase 2 chloroplastic-like
blastp_pdb 2vuy_B 229 748 + 520 Gaps:71 79.81 718 32.46 3e-76 mol:protein length:718 GLYCOGEN OPERON PROTEIN GLGX
blastp_pdb 2vuy_A 229 748 + 520 Gaps:71 79.81 718 32.46 3e-76 mol:protein length:718 GLYCOGEN OPERON PROTEIN GLGX
blastp_pdb 2vr5_B 229 748 + 520 Gaps:71 79.81 718 32.46 3e-76 mol:protein length:718 GLYCOGEN OPERON PROTEIN GLGX
blastp_pdb 2vr5_A 229 748 + 520 Gaps:71 79.81 718 32.46 3e-76 mol:protein length:718 GLYCOGEN OPERON PROTEIN GLGX
blastp_pdb 2vnc_B 229 748 + 520 Gaps:71 79.81 718 32.46 3e-76 mol:protein length:718 GLYCOGEN OPERON PROTEIN GLGX
blastp_pdb 2vnc_A 229 748 + 520 Gaps:71 79.81 718 32.46 3e-76 mol:protein length:718 GLYCOGEN OPERON PROTEIN GLGX
blastp_pdb 2wsk_A 232 769 + 538 Gaps:71 87.21 657 30.54 4e-54 mol:protein length:657 GLYCOGEN DEBRANCHING ENZYME
blastp_pdb 1bf2_A 237 843 + 607 Gaps:144 94.00 750 22.98 1e-26 mol:protein length:750 ISOAMYLASE
blastp_pdb 2ya0_A 233 725 + 493 Gaps:96 72.13 714 23.69 1e-16 mol:protein length:714 PUTATIVE ALKALINE AMYLOPULLULANASE
blastp_pdb 2ya1_A 233 725 + 493 Gaps:96 50.79 1014 23.69 1e-16 mol:protein length:1014 PUTATIVE ALKALINE AMYLOPULLULANASE
blastp_uniprot_sprot sp|Q8L735|ISOA2_ARATH 1 880 + 880 Gaps:15 99.43 882 57.24 0.0 Isoamylase 2 chloroplastic OS Arabidopsis thaliana GN ISA2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0S5|ISOA3_ARATH 232 880 + 649 Gaps:82 87.83 764 38.30 3e-124 Isoamylase 3 chloroplastic OS Arabidopsis thaliana GN ISA3 PE 1 SV 2
blastp_uniprot_sprot sp|O04196|ISOA1_ARATH 232 882 + 651 Gaps:98 89.53 783 32.95 9e-98 Isoamylase 1 chloroplastic OS Arabidopsis thaliana GN ISA1 PE 1 SV 1
blastp_uniprot_sprot sp|P0A4Y4|GLGX_MYCTU 232 846 + 615 Gaps:93 93.20 721 30.21 4e-76 Glycogen operon protein GlgX homolog OS Mycobacterium tuberculosis GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|P0A4Y5|GLGX_MYCBO 232 846 + 615 Gaps:93 93.20 721 30.21 4e-76 Glycogen operon protein GlgX homolog OS Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|C6DH78|GLGX_PECCP 229 837 + 609 Gaps:101 97.26 658 30.63 2e-60 Glycogen debranching enzyme OS Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|B2VJR7|GLGX_ERWT9 229 769 + 541 Gaps:66 87.39 658 33.22 4e-58 Glycogen debranching enzyme OS Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|A6TF50|GLGX_KLEP7 232 776 + 545 Gaps:71 88.15 658 31.90 8e-58 Glycogen debranching enzyme OS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|B5XTQ8|GLGX_KLEP3 232 776 + 545 Gaps:71 88.15 658 32.07 1e-57 Glycogen debranching enzyme OS Klebsiella pneumoniae (strain 342) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|A8GKU9|GLGX_SERP5 232 828 + 597 Gaps:95 98.64 661 29.91 2e-57 Glycogen debranching enzyme OS Serratia proteamaculans (strain 568) GN glgX PE 3 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 370 749 380 SM00642 none Alpha-amylase domain IPR006589
Pfam 236 329 94 PF02922 none Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IPR004193
Gene3D 368 751 384 G3DSA:3.20.20.80 none none IPR013781
PANTHER 809 882 74 PTHR10357 none none IPR015902
Gene3D 763 880 118 G3DSA:2.60.40.1180 none none IPR013780
PANTHER 809 882 74 PTHR10357:SF115 none none none
SUPERFAMILY 354 751 398 SSF51445 none none IPR017853
Coils 745 766 22 Coil none none none
Pfam 394 480 87 PF00128 none Alpha amylase, catalytic domain IPR006047
Gene3D 232 367 136 G3DSA:2.60.40.10 none none IPR013783
SUPERFAMILY 232 363 132 SSF81296 none none IPR014756
PANTHER 180 793 614 PTHR10357:SF115 none none none
PANTHER 180 793 614 PTHR10357 none none IPR015902
SUPERFAMILY 764 880 117 SSF51011 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting