3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0016020 | membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| GO:0015979 | photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
| GO:0009523 | photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|rcu:RCOM_1045940 | 1 | 120 | + | 120 | none | 99.17 | 121 | 85.83 | 1e-65 | hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0018s07160g | 1 | 120 | + | 120 | Gaps:1 | 99.18 | 122 | 80.99 | 1e-59 | membrane family protein |
| blastp_kegg | lcl|cic:CICLE_v10009915mg | 5 | 120 | + | 116 | Gaps:5 | 98.37 | 123 | 80.17 | 3e-55 | hypothetical protein |
| blastp_kegg | lcl|tcc:TCM_037367 | 5 | 120 | + | 116 | Gaps:4 | 98.36 | 122 | 79.17 | 1e-54 | Photosystem II subunit X |
| blastp_kegg | lcl|sot:102601302 | 1 | 120 | + | 120 | Gaps:1 | 99.17 | 120 | 76.47 | 5e-54 | uncharacterized LOC102601302 |
| blastp_kegg | lcl|cit:102612959 | 5 | 120 | + | 116 | Gaps:5 | 98.37 | 123 | 78.51 | 7e-54 | uncharacterized LOC102612959 |
| blastp_kegg | lcl|sly:101259747 | 1 | 120 | + | 120 | Gaps:2 | 99.16 | 119 | 75.42 | 4e-51 | uncharacterized LOC101259747 |
| blastp_kegg | lcl|cic:CICLE_v10009914mg | 1 | 120 | + | 120 | Gaps:2 | 99.19 | 123 | 73.77 | 2e-50 | hypothetical protein |
| blastp_kegg | lcl|cit:102611151 | 1 | 120 | + | 120 | Gaps:2 | 99.19 | 123 | 73.77 | 2e-50 | uncharacterized LOC102611151 |
| blastp_kegg | lcl|pop:POPTR_0006s23890g | 5 | 120 | + | 116 | Gaps:6 | 98.39 | 124 | 71.31 | 4e-50 | POPTRDRAFT_832074 hypothetical protein |
| rpsblast_cdd | gnl|CDD|177709 | 1 | 120 | + | 120 | Gaps:3 | 95.28 | 127 | 42.98 | 5e-12 | PLN00088 PLN00088 predicted protein Provisional. |
5 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 91 | 115 | 25 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Gene3D | 73 | 120 | 48 | G3DSA:1.20.5.510 | none | none | none |
| Phobius | 116 | 121 | 6 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 1 | 90 | 90 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Pfam | 84 | 120 | 37 | PF06596 | none | Photosystem II reaction centre X protein (PsbX) | IPR009518 |
9 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
| Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
| Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
| Bourran_2000_2002_QTL2_Delta.F | Qrob_Chr02 | 2 | s_1CSO13_1244 | s_1AVEUF_1540 | 55.44 | 46,71 | 63,68 | lod | 7.3232 | 0.058 |
| Bourran2_2002_QTL9_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1BFNDA_375 | s_1A3VA1_2139 | 32,5 | 17 | 62 | lod | 3,1 | 4,2 |
| Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf | Qrob_Chr02 | 2 | s_1AEP21_172 | v_6048_204 | 46.33 | 22,5 | 65,23 | lod | 4.972 | 0.03 |
