Protein : Qrob_P0322670.2 Q. robur
Protein Identifier  ? Qrob_P0322670.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=23) KOG0252//KOG0253//KOG0254//KOG0255//KOG0569 - Inorganic phosphate transporter [Inorganic ion transport and metabolism]. // Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]. // Predicted transporter (major facilitator superfamily) [General function prediction only]. // Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 543  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.
GO:0022891 substrate-specific transmembrane transporter activity Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014880 1 538 + 538 Gaps:37 98.82 507 82.24 0.0 Major facilitator superfamily protein
blastp_kegg lcl|pmum:103333380 1 535 + 535 Gaps:37 98.03 508 80.92 0.0 hexose carrier protein HEX6-like
blastp_kegg lcl|pper:PRUPE_ppa004465mg 1 535 + 535 Gaps:37 98.03 508 80.52 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_005G009500g 1 537 + 537 Gaps:36 95.98 522 80.04 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_014877 1 538 + 538 Gaps:37 98.24 510 79.44 0.0 Major facilitator superfamily protein
blastp_kegg lcl|vvi:100232949 1 538 + 538 Gaps:37 98.62 508 80.04 0.0 HT4 hexose transporter-like
blastp_kegg lcl|rcu:RCOM_1501000 1 536 + 536 Gaps:37 97.84 510 81.36 0.0 sugar transporter putative (EC:1.3.1.74)
blastp_kegg lcl|pxb:103952749 1 537 + 537 Gaps:36 98.43 509 79.44 0.0 hexose carrier protein HEX6-like
blastp_kegg lcl|mtr:MTR_3g008160 3 536 + 534 Gaps:37 97.64 509 80.08 0.0 Hexose carrier
blastp_kegg lcl|fve:101302687 1 535 + 535 Gaps:36 98.62 506 79.16 0.0 hexose carrier protein HEX6-like
blastp_uniprot_sprot sp|Q07423|HEX6_RICCO 1 536 + 536 Gaps:37 97.84 510 81.16 0.0 Hexose carrier protein HEX6 OS Ricinus communis GN HEX6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L7R8|STP3_ARATH 16 537 + 522 Gaps:46 94.94 514 64.96 0.0 Sugar transport protein 3 OS Arabidopsis thaliana GN STP3 PE 2 SV 2
blastp_uniprot_sprot sp|Q39228|STP4_ARATH 13 536 + 524 Gaps:41 94.75 514 60.99 0.0 Sugar transport protein 4 OS Arabidopsis thaliana GN STP4 PE 1 SV 1
blastp_uniprot_sprot sp|Q41144|STC_RICCO 14 537 + 524 Gaps:41 93.50 523 59.51 0.0 Sugar carrier protein C OS Ricinus communis GN STC PE 2 SV 1
blastp_uniprot_sprot sp|Q94AZ2|STP13_ARATH 4 538 + 535 Gaps:41 95.06 526 56.60 0.0 Sugar transport protein 13 OS Arabidopsis thaliana GN STP13 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LT15|STP10_ARATH 18 536 + 519 Gaps:41 93.77 514 57.68 0.0 Sugar transport protein 10 OS Arabidopsis thaliana GN STP10 PE 2 SV 1
blastp_uniprot_sprot sp|O04249|STP7_ARATH 13 542 + 530 Gaps:40 95.52 513 56.53 0.0 Sugar transport protein 7 OS Arabidopsis thaliana GN STP7 PE 2 SV 1
blastp_uniprot_sprot sp|P23586|STP1_ARATH 2 541 + 540 Gaps:42 96.55 522 58.13 0.0 Sugar transport protein 1 OS Arabidopsis thaliana GN STP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SX48|STP9_ARATH 18 537 + 520 Gaps:50 95.16 517 57.93 0.0 Sugar transport protein 9 OS Arabidopsis thaliana GN STP9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FMX3|STP11_ARATH 4 531 + 528 Gaps:44 96.50 514 57.26 0.0 Sugar transport protein 11 OS Arabidopsis thaliana GN STP11 PE 1 SV 1
rpsblast_cdd gnl|CDD|200987 26 523 + 498 Gaps:62 99.78 449 36.38 3e-83 pfam00083 Sugar_tr Sugar (and other) transporter.
rpsblast_cdd gnl|CDD|162084 14 519 + 506 Gaps:66 96.47 481 38.15 6e-77 TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|182225 126 525 + 400 Gaps:45 84.55 479 31.60 6e-50 PRK10077 xylE D-xylose transporter XylE Provisional.
rpsblast_cdd gnl|CDD|162097 113 518 + 406 Gaps:60 75.25 505 22.63 4e-13 TIGR00898 2A0119 cation transport protein.
rpsblast_cdd gnl|CDD|119392 106 509 + 404 Gaps:16 93.18 352 24.39 2e-12 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
rpsblast_cdd gnl|CDD|162095 126 467 + 342 Gaps:40 80.90 398 25.16 6e-12 TIGR00895 2A0115 benzoate transport.
rpsblast_cdd gnl|CDD|191813 121 469 + 349 Gaps:46 87.57 346 20.13 1e-11 pfam07690 MFS_1 Major Facilitator Superfamily.
rpsblast_cdd gnl|CDD|188094 170 501 + 332 Gaps:57 74.37 394 23.89 6e-11 TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083) including citrate-H+ symporters dicarboxylate:H+ symporters the proline/glycine-betaine transporter ProP etc.
rpsblast_cdd gnl|CDD|32643 126 466 + 341 Gaps:64 72.34 394 20.35 7e-07 COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism].
rpsblast_cdd gnl|CDD|129965 140 521 + 382 Gaps:59 82.67 502 22.65 9e-07 TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

43 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 136 146 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 380 385 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 12 518 507 TIGR00879 "Reactome:REACT_15518" SP: MFS transporter, sugar porter (SP) family IPR003663
Phobius 483 487 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 10 47 38 PTHR24063:SF312 none none none
PANTHER 84 542 459 PTHR24063:SF312 none none none
Phobius 343 353 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 177 202 26 PS00217 none Sugar transport proteins signature 2. IPR005829
Phobius 409 419 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 461 482 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 33 43 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 172 191 20 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 425 446 22 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 330 340 11 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
PRINTS 448 460 13 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663
Phobius 386 408 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 354 379 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 110 270 161 G3DSA:1.20.1250.20 none none none
Gene3D 321 513 193 G3DSA:1.20.1250.20 none none none
Pfam 26 523 498 PF00083 none Sugar (and other) transporter IPR005828
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 25 512 488 PS50850 none Major facilitator superfamily (MFS) profile. IPR020846
Phobius 167 171 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 147 166 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 420 440 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 235 257 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 488 508 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 116 135 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 509 542 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 172 193 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

12 Localization

Analysis Start End Length
TMHMM 238 257 19
TMHMM 357 379 22
TMHMM 489 508 19
TMHMM 172 194 22
TMHMM 201 223 22
TMHMM 21 43 22
TMHMM 117 139 22
TMHMM 423 445 22
TMHMM 320 342 22
TMHMM 457 479 22
TMHMM 386 408 22
TMHMM 146 168 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting