Protein : Qrob_P0322640.2 Q. robur
Protein Identifier  ? Qrob_P0322640.2 Organism . Name  Quercus robur
Score  18.2 Score Type  egn
Protein Description  (M=1) KOG0253//KOG0254//KOG0255//KOG0569//KOG2615 - Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]. // Predicted transporter (major facilitator superfamily) [General function prediction only]. // Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]. // Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. // Permease of the major facilitator superfamily [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 444  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.
GO:0022891 substrate-specific transmembrane transporter activity Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014880 1 435 + 435 Gaps:71 98.22 507 69.28 0.0 Major facilitator superfamily protein
blastp_kegg lcl|pmum:103333380 1 435 + 435 Gaps:71 98.03 508 67.87 0.0 hexose carrier protein HEX6-like
blastp_kegg lcl|pper:PRUPE_ppa004465mg 1 435 + 435 Gaps:71 98.03 508 67.27 0.0 hypothetical protein
blastp_kegg lcl|mdm:103430931 1 435 + 435 Gaps:71 98.03 508 66.67 0.0 hexose carrier protein HEX6-like
blastp_kegg lcl|cic:CICLE_v10004779mg 1 435 + 435 Gaps:73 97.85 511 66.40 0.0 hypothetical protein
blastp_kegg lcl|vvi:100232949 1 433 + 433 Gaps:71 97.64 508 67.54 0.0 HT4 hexose transporter-like
blastp_kegg lcl|cic:CICLE_v10004798mg 1 436 + 436 Gaps:73 99.21 505 66.27 0.0 hypothetical protein
blastp_kegg lcl|pxb:103952749 1 435 + 435 Gaps:72 98.04 509 66.33 0.0 hexose carrier protein HEX6-like
blastp_kegg lcl|rcu:RCOM_1501000 1 435 + 435 Gaps:71 97.65 510 68.27 0.0 sugar transporter putative (EC:1.3.1.74)
blastp_kegg lcl|cit:102617435 1 436 + 436 Gaps:73 99.21 505 65.67 0.0 hexose carrier protein HEX6-like
blastp_uniprot_sprot sp|Q07423|HEX6_RICCO 1 435 + 435 Gaps:71 97.65 510 67.87 0.0 Hexose carrier protein HEX6 OS Ricinus communis GN HEX6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L7R8|STP3_ARATH 11 432 + 422 Gaps:78 94.94 514 55.74 5e-170 Sugar transport protein 3 OS Arabidopsis thaliana GN STP3 PE 2 SV 2
blastp_uniprot_sprot sp|P23586|STP1_ARATH 2 435 + 434 Gaps:75 95.59 522 50.10 1e-152 Sugar transport protein 1 OS Arabidopsis thaliana GN STP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q94AZ2|STP13_ARATH 4 435 + 432 Gaps:77 94.49 526 47.89 3e-151 Sugar transport protein 13 OS Arabidopsis thaliana GN STP13 PE 1 SV 2
blastp_uniprot_sprot sp|Q41144|STC_RICCO 14 435 + 422 Gaps:81 93.12 523 49.90 3e-150 Sugar carrier protein C OS Ricinus communis GN STC PE 2 SV 1
blastp_uniprot_sprot sp|Q9LT15|STP10_ARATH 18 435 + 418 Gaps:75 93.58 514 48.23 6e-146 Sugar transport protein 10 OS Arabidopsis thaliana GN STP10 PE 2 SV 1
blastp_uniprot_sprot sp|O04249|STP7_ARATH 13 435 + 423 Gaps:74 94.15 513 47.41 1e-144 Sugar transport protein 7 OS Arabidopsis thaliana GN STP7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SX48|STP9_ARATH 18 435 + 418 Gaps:76 93.23 517 49.17 2e-144 Sugar transport protein 9 OS Arabidopsis thaliana GN STP9 PE 1 SV 1
blastp_uniprot_sprot sp|O65413|STP12_ARATH 2 433 + 432 Gaps:77 97.44 508 48.08 3e-140 Sugar transport protein 12 OS Arabidopsis thaliana GN STP12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FMX3|STP11_ARATH 8 431 + 424 Gaps:75 95.14 514 47.85 6e-140 Sugar transport protein 11 OS Arabidopsis thaliana GN STP11 PE 1 SV 1
rpsblast_cdd gnl|CDD|200987 26 409 + 384 Gaps:68 93.99 449 30.09 1e-53 pfam00083 Sugar_tr Sugar (and other) transporter.
rpsblast_cdd gnl|CDD|162084 14 408 + 395 Gaps:23 77.75 481 38.50 2e-33 TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_cdd gnl|CDD|182225 11 426 + 416 Gaps:122 98.96 479 25.74 2e-33 PRK10077 xylE D-xylose transporter XylE Provisional.
rpsblast_cdd gnl|CDD|119392 70 410 + 341 Gaps:42 90.06 352 23.03 2e-13 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
rpsblast_cdd gnl|CDD|191813 85 387 + 303 Gaps:40 89.31 346 18.12 5e-07 pfam07690 MFS_1 Major Facilitator Superfamily.
rpsblast_cdd gnl|CDD|188094 135 379 + 245 Gaps:48 65.74 394 22.78 6e-07 TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083) including citrate-H+ symporters dicarboxylate:H+ symporters the proline/glycine-betaine transporter ProP etc.
rpsblast_kog gnl|CDD|35475 13 410 + 398 Gaps:77 85.58 513 32.80 3e-44 KOG0254 KOG0254 KOG0254 Predicted transporter (major facilitator superfamily) [General function prediction only].
rpsblast_kog gnl|CDD|35789 15 405 + 391 Gaps:77 90.31 485 24.66 7e-24 KOG0569 KOG0569 KOG0569 Permease of the major facilitator superfamily [Carbohydrate transport and metabolism].
rpsblast_kog gnl|CDD|35476 77 408 + 332 Gaps:56 70.25 521 19.13 1e-10 KOG0255 KOG0255 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only].
rpsblast_kog gnl|CDD|35474 85 329 + 245 Gaps:19 46.21 528 22.54 4e-09 KOG0253 KOG0253 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only].

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 88 107 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 370 387 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 43 87 45 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 293 298 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 29 409 381 SSF103473 none none IPR020846
Phobius 226 270 45 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 119 149 31 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 169 190 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 359 369 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 299 320 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 10 437 428 PTHR24063 none none none
Phobius 321 331 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 191 201 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 261 409 149 G3DSA:1.20.1250.20 none none none
Gene3D 45 235 191 G3DSA:1.20.1250.20 none none none
Pfam 26 267 242 PF00083 none Sugar (and other) transporter IPR005828
Pfam 268 409 142 PF00083 none Sugar (and other) transporter IPR005828
Phobius 388 392 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 332 358 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 202 225 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 412 443 32 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 393 411 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 10 437 428 PTHR24063:SF312 none none none
Phobius 150 168 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 271 292 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 21 42 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 25 424 400 PS50850 none Major facilitator superfamily (MFS) profile. IPR020846
Phobius 108 118 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 136 155 20 PR00171 "Reactome:REACT_15518" Sugar transporter signature IPR003663

9 Localization

Analysis Start End Length
TMHMM 80 102 22
TMHMM 172 194 22
TMHMM 331 353 22
TMHMM 115 137 22
TMHMM 21 43 22
TMHMM 374 396 22
TMHMM 201 223 22
TMHMM 299 321 22
TMHMM 270 292 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting