Protein : Qrob_P0321670.2 Q. robur
Protein Identifier  ? Qrob_P0321670.2 Organism . Name  Quercus robur
Score  75.0 Score Type  egn
Protein Description  (M=1) K08955 - ATP-dependent metalloprotease [EC:3.4.24.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 758  
Kegg Orthology  K08955
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0015s02230g 2 756 + 755 Gaps:64 99.87 798 78.80 0.0 POPTRDRAFT_251115 hypothetical protein
blastp_kegg lcl|pmum:103336947 20 757 + 738 Gaps:59 97.76 805 80.56 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial
blastp_kegg lcl|tcc:TCM_015358 2 742 + 741 Gaps:65 98.26 804 79.24 0.0 Cell division protease ftsH isoform 1
blastp_kegg lcl|pvu:PHAVU_001G062000g 114 757 + 644 none 80.90 796 90.99 0.0 hypothetical protein
blastp_kegg lcl|cmo:103482953 115 756 + 642 Gaps:1 77.38 831 90.82 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial
blastp_kegg lcl|csv:101221317 115 756 + 642 none 77.35 830 90.50 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial-like
blastp_kegg lcl|gmx:100815980 110 757 + 648 none 82.13 789 89.97 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial-like
blastp_kegg lcl|pxb:103960434 4 757 + 754 Gaps:78 99.88 825 75.61 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial
blastp_kegg lcl|gmx:100794322 5 757 + 753 Gaps:66 99.74 779 79.41 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial-like
blastp_kegg lcl|mdm:103436925 22 757 + 736 Gaps:79 97.33 825 76.71 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial
blastp_pdb 2cea_F 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2cea_E 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2cea_D 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2cea_C 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2cea_B 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2cea_A 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2ce7_F 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2ce7_E 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2ce7_D 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_pdb 2ce7_C 309 733 + 425 Gaps:22 93.07 476 52.14 4e-150 mol:protein length:476 CELL DIVISION PROTEIN FTSH
blastp_uniprot_sprot sp|Q9FGM0|FTSHB_ARATH 1 735 + 735 Gaps:63 97.52 806 75.06 0.0 ATP-dependent zinc metalloprotease FTSH 11 chloroplastic/mitochondrial OS Arabidopsis thaliana GN FTSH11 PE 1 SV 1
blastp_uniprot_sprot sp|A2ZVG7|FTSH9_ORYSJ 115 751 + 637 Gaps:19 82.91 784 82.62 0.0 ATP-dependent zinc metalloprotease FTSH 9 chloroplastic/mitochondrial OS Oryza sativa subsp. japonica GN FTSH9 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LQJ8|FTSH5_ORYSJ 138 733 + 596 Gaps:48 83.08 715 56.73 0.0 ATP-dependent zinc metalloprotease FTSH 5 mitochondrial OS Oryza sativa subsp. japonica GN FTSH5 PE 3 SV 1
blastp_uniprot_sprot sp|O80983|FTSH4_ARATH 137 755 + 619 Gaps:56 85.22 717 55.16 0.0 ATP-dependent zinc metalloprotease FTSH 4 mitochondrial OS Arabidopsis thaliana GN FTSH4 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LQJ9|FTSH4_ORYSJ 138 733 + 596 Gaps:53 82.79 709 54.86 0.0 ATP-dependent zinc metalloprotease FTSH 4 mitochondrial OS Oryza sativa subsp. japonica GN FTSH4 PE 3 SV 1
blastp_uniprot_sprot sp|B8H444|FTSH_CAUCN 187 756 + 570 Gaps:41 91.53 626 50.96 1e-176 ATP-dependent zinc metalloprotease FtsH OS Caulobacter crescentus (strain NA1000 / CB15N) GN ftsH PE 2 SV 1
blastp_uniprot_sprot sp|O88967|YMEL1_MOUSE 305 733 + 429 Gaps:5 60.42 715 59.49 2e-171 ATP-dependent zinc metalloprotease YME1L1 OS Mus musculus GN Yme1l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q925S8|YMEL1_RAT 305 733 + 429 Gaps:5 60.42 715 59.49 5e-171 ATP-dependent zinc metalloprotease YME1L1 OS Rattus norvegicus GN Yme1l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q96TA2|YMEL1_HUMAN 305 733 + 429 Gaps:5 55.89 773 59.26 6e-170 ATP-dependent zinc metalloprotease YME1L1 OS Homo sapiens GN YME1L1 PE 1 SV 2
blastp_uniprot_sprot sp|A1URA3|FTSH_BARBK 222 733 + 512 Gaps:34 68.06 764 50.77 2e-166 ATP-dependent zinc metalloprotease FtsH OS Bartonella bacilliformis (strain ATCC 35685 / KC583) GN ftsH PE 3 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 7 751 745 MF_01458 none ATP-dependent zinc metalloprotease FtsH [ftsH]. IPR005936
Phobius 2 12 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SMART 343 478 136 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Gene3D 487 559 73 G3DSA:1.10.8.60 none none none
Pfam 537 732 196 PF01434 none Peptidase family M41 IPR000642
ProSitePatterns 446 464 19 PS00674 none AAA-protein family signature. IPR003960
Phobius 13 17 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 225 757 533 PTHR23076:SF40 none none none
Coils 690 725 36 Coil none none none
Phobius 18 249 232 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 558 733 176 SSF140990 none none none
TIGRFAM 249 733 485 TIGR01241 none FtsH_fam: ATP-dependent metallopeptidase HflB IPR005936
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 347 475 129 PF00004 none ATPase family associated with various cellular activities (AAA) IPR003959
SUPERFAMILY 309 571 263 SSF52540 none none IPR027417
Phobius 250 271 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 307 486 180 G3DSA:3.40.50.300 none none IPR027417
PANTHER 225 757 533 PTHR23076 none none none
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 272 757 486 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

2 Localization

Analysis Start End Length
TMHMM 250 272 22
SignalP_GRAM_POSITIVE 1 17 16

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1

0 Targeting