Protein : Qrob_P0317420.2 Q. robur
Protein Identifier  ? Qrob_P0317420.2 Organism . Name  Quercus robur
Score  85.0 Score Type  egn
Protein Description  (M=2) PTHR21535//PTHR21535:SF27 - MAGNESIUM AND COBALT TRANSPORT PROTEIN/MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 657  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0030001 metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0046873 metal ion transmembrane transporter activity Enables the transfer of metal ions from one side of a membrane to the other.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_001880 109 655 + 547 Gaps:26 98.22 563 70.16 0.0 Magnesium transporter CorA family protein
blastp_kegg lcl|tcc:TCM_029553 108 655 + 548 Gaps:12 98.59 568 66.96 0.0 Magnesium transporter CorA-like family protein
blastp_kegg lcl|rcu:RCOM_0634270 116 655 + 540 Gaps:13 96.32 570 68.12 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022982mg 108 656 + 549 Gaps:43 99.81 515 73.93 0.0 hypothetical protein
blastp_kegg lcl|sly:101252438 103 656 + 554 Gaps:13 100.00 561 68.63 0.0 uncharacterized LOC101252438
blastp_kegg lcl|sot:102599216 103 656 + 554 Gaps:14 100.00 560 68.75 0.0 uncharacterized LOC102599216
blastp_kegg lcl|cic:CICLE_v10014753mg 97 655 + 559 Gaps:10 99.47 568 66.19 0.0 hypothetical protein
blastp_kegg lcl|cit:102630391 97 655 + 559 Gaps:10 99.47 568 66.19 0.0 uncharacterized LOC102630391
blastp_kegg lcl|pper:PRUPE_ppa004035mg 115 655 + 541 Gaps:18 99.81 534 69.79 0.0 hypothetical protein
blastp_kegg lcl|pmum:103325020 104 655 + 552 Gaps:29 98.55 553 68.81 0.0 uncharacterized LOC103325020
blastp_uniprot_sprot sp|Q8L5Z7|SNX2A_ARATH 1 110 + 110 Gaps:2 19.08 587 69.64 1e-38 Sorting nexin 2A OS Arabidopsis thaliana GN SNX2A PE 1 SV 1
blastp_uniprot_sprot sp|B9DFS6|SNX2B_ARATH 1 110 + 110 none 19.23 572 68.18 4e-38 Sorting nexin 2B OS Arabidopsis thaliana GN SNX2B PE 1 SV 1
rpsblast_cdd gnl|CDD|30943 269 589 + 321 Gaps:41 90.06 322 21.38 6e-10 COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|201848 397 589 + 193 Gaps:17 63.23 291 27.17 2e-07 pfam01544 CorA CorA-like Mg2+ transporter protein. The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 559 569 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 537 587 51 SSF144083 none none none
Phobius 570 594 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 537 537 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 457 588 132 PF01544 none CorA-like Mg2+ transporter protein IPR002523
PANTHER 216 640 425 PTHR21535 none none none
PANTHER 216 640 425 PTHR21535:SF27 none none none
Phobius 595 656 62 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 538 558 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 530 588 59 G3DSA:1.20.58.340 none none none

2 Localization

Analysis Start End Length
TMHMM 572 594 22
TMHMM 538 557 19

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting