Protein : Qrob_P0316570.2 Q. robur
Protein Identifier  ? Qrob_P0316570.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) KOG0261//KOG0262 - RNA polymerase III large subunit [Transcription]. // RNA polymerase I large subunit [Transcription]. Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 295  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101232569 1 181 + 181 Gaps:34 64.11 326 72.73 2e-96 DNA-directed RNA polymerase subunit beta''-like
blastp_kegg lcl|pmum:18668007 1 266 + 266 Gaps:34 23.17 1368 78.23 3e-90 rpoC2 CP95_p077 RNA polymerase beta' subunit
blastp_kegg lcl|pper:PrpeC_p011 1 266 + 266 Gaps:34 23.17 1368 78.23 3e-90 rpoC2 RNA polymerase beta' subunit
blastp_kegg lcl|aly:ARALYDRAFT_893972 1 266 + 266 Gaps:34 22.41 1379 79.94 3e-90 RNA polymerase beta subunit-2
blastp_kegg lcl|ath:ArthCp012 1 266 + 266 Gaps:34 22.46 1376 79.94 3e-90 rpoC2 RNA polymerase beta'' chain
blastp_kegg lcl|atr:s00390p00012910 1 266 + 266 Gaps:34 18.29 1733 77.29 1e-89 AMTR_s00390p00012910 hypothetical protein
blastp_kegg lcl|fve:10251495 1 266 + 266 Gaps:34 22.86 1387 77.60 2e-89 rpoC2 FvH4_C0017 RNA polymerase beta subunit
blastp_kegg lcl|sot:4099930 1 266 + 266 Gaps:34 22.77 1392 78.23 5e-89 rpoC2 SotuCp011 RNA polymerase beta'' chain
blastp_kegg lcl|sot:102588390 1 266 + 266 Gaps:34 22.77 1392 78.23 5e-89 DNA-directed RNA polymerase subunit beta''-like
blastp_kegg lcl|tcc:ThcaC_p011 1 266 + 266 Gaps:34 22.79 1391 78.23 5e-89 rpoC2 RNA polymerase beta' subunit
blastp_pdb 1ynn_J 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1ynn_D 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1ynj_J 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1ynj_D 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1l9z_D 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 RNA POLYMERASE BETA-PRIME SUBUNIT
blastp_pdb 1l9u_M 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 RNA POLYMERASE BETA-PRIME SUBUNIT
blastp_pdb 1l9u_D 1 264 + 264 Gaps:47 19.95 1524 37.50 1e-36 mol:protein length:1524 RNA POLYMERASE BETA-PRIME SUBUNIT
blastp_pdb 2gho_D 1 261 + 261 Gaps:45 23.84 1233 37.76 2e-36 mol:protein length:1233 DNA-directed RNA polymerase beta' chain
blastp_pdb 1i6v_D 1 261 + 261 Gaps:47 23.26 1264 38.10 3e-36 mol:protein length:1264 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 3eql_N 1 264 + 264 Gaps:57 19.95 1524 38.16 4e-36 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_uniprot_sprot sp|Q09X27|RPOC2_MORIN 1 266 + 266 Gaps:34 22.82 1389 78.86 3e-93 DNA-directed RNA polymerase subunit beta'' OS Morus indica GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLS3|RPOC2_NASOF 1 266 + 266 Gaps:34 22.41 1379 79.94 1e-91 DNA-directed RNA polymerase subunit beta'' OS Nasturtium officinale GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKI2|RPOC2_CAPBU 1 266 + 266 Gaps:34 22.41 1379 79.94 1e-91 DNA-directed RNA polymerase subunit beta'' OS Capsella bursa-pastoris GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJS3|RPOC2_OLIPU 1 266 + 266 Gaps:34 22.41 1379 79.61 1e-91 DNA-directed RNA polymerase subunit beta'' OS Olimarabidopsis pumila GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|P56764|RPOC2_ARATH 1 266 + 266 Gaps:34 22.46 1376 79.94 1e-91 DNA-directed RNA polymerase subunit beta'' OS Arabidopsis thaliana GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKS1|RPOC2_CRUWA 1 266 + 266 Gaps:34 22.41 1379 79.61 1e-91 DNA-directed RNA polymerase subunit beta'' OS Crucihimalaya wallichii GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QL09|RPOC2_DRANE 1 266 + 266 Gaps:34 22.38 1381 79.61 1e-91 DNA-directed RNA polymerase subunit beta'' OS Draba nemorosa GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|Q49L08|RPOC2_EUCGG 1 274 + 274 Gaps:38 23.64 1392 76.90 1e-91 DNA-directed RNA polymerase subunit beta'' OS Eucalyptus globulus subsp. globulus GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QK08|RPOC2_ARAHI 1 266 + 266 Gaps:34 22.54 1371 79.61 1e-91 DNA-directed RNA polymerase subunit beta'' OS Arabis hirsuta GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJA5|RPOC2_AETCO 1 266 + 266 Gaps:34 22.31 1385 79.94 2e-91 DNA-directed RNA polymerase subunit beta'' OS Aethionema cordifolium GN rpoC2 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 2 269 268 SSF64484 none none none
Pfam 110 158 49 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
Pfam 159 195 37 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
Pfam 51 95 45 PF05000 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 4 IPR007083
PANTHER 1 267 267 PTHR19376:SF32 none none none
PANTHER 1 267 267 PTHR19376 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting