Protein : Qrob_P0314230.2 Q. robur
Protein Identifier  ? Qrob_P0314230.2 Organism . Name  Quercus robur
Score  64.0 Score Type  egn
Protein Description  (M=4) PF12070 - Protein of unknown function (DUF3550/UPF0682) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 347  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003714 transcription corepressor activity Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263116 132 312 + 181 Gaps:9 83.56 225 57.98 3e-62 uncharacterized LOC100263116
blastp_kegg lcl|pxb:103961147 91 286 + 196 Gaps:5 88.13 219 53.89 1e-60 neurogenic locus notch homolog protein 2-like
blastp_kegg lcl|rcu:RCOM_0911130 131 275 + 145 Gaps:1 60.00 240 63.89 2e-59 hypothetical protein
blastp_kegg lcl|mdm:103453160 131 287 + 157 Gaps:2 71.69 219 59.87 2e-59 uncharacterized LOC103453160
blastp_kegg lcl|pop:POPTR_0008s15660g 131 286 + 156 Gaps:1 50.99 304 58.71 3e-59 POPTRDRAFT_657197 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s09260g 130 296 + 167 Gaps:6 75.23 214 60.25 4e-59 POPTRDRAFT_769268 hypothetical protein
blastp_kegg lcl|mdm:103414674 91 286 + 196 Gaps:5 88.13 219 52.85 4e-59 uncharacterized LOC103414674
blastp_kegg lcl|pxb:103942865 132 287 + 156 Gaps:2 71.23 219 60.26 5e-59 protein jagged-1b-like
blastp_kegg lcl|mdm:103453235 91 290 + 200 Gaps:5 98.01 201 52.28 6e-59 uncharacterized LOC103453235
blastp_kegg lcl|pper:PRUPE_ppa011394mg 118 286 + 169 Gaps:6 77.83 212 58.79 1e-57 hypothetical protein
blastp_uniprot_sprot sp|Q54YY1|SCAI_DICDI 8 113 + 106 Gaps:4 13.97 773 46.30 3e-21 Protein SCAI homolog OS Dictyostelium discoideum GN scai PE 3 SV 1
blastp_uniprot_sprot sp|Q8C8N2|SCAI_MOUSE 15 112 + 98 Gaps:1 16.34 606 46.46 2e-20 Protein SCAI OS Mus musculus GN Scai PE 1 SV 2
blastp_uniprot_sprot sp|Q8N9R8|SCAI_HUMAN 15 112 + 98 Gaps:1 16.34 606 46.46 3e-20 Protein SCAI OS Homo sapiens GN SCAI PE 1 SV 2
rpsblast_cdd gnl|CDD|152505 13 131 + 119 Gaps:1 23.44 512 45.00 6e-42 pfam12070 DUF3550 Protein of unknown function (DUF3550/UPF0682). This family of proteins is functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 12 129 118 PTHR21243 none none none
Pfam 14 131 118 PF12070 none Protein of unknown function (DUF3550/UPF0682) IPR022709
PANTHER 12 129 118 PTHR21243:SF13 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting