Protein : Qrob_P0312500.2 Q. robur
Protein Identifier  ? Qrob_P0312500.2 Organism . Name  Quercus robur
Score  100.1 Score Type  egn
Protein Description  (M=1) K05539 - tRNA-dihydrouridine synthase A [EC:1.-.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 431  
Kegg Orthology  K05539
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO:0017150 tRNA dihydrouridine synthase activity Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248175 1 430 + 430 Gaps:3 100.00 433 78.75 0.0 tRNA-dihydrouridine synthase A-like
blastp_kegg lcl|cmo:103500317 1 428 + 428 Gaps:6 99.30 431 78.74 0.0 uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
blastp_kegg lcl|csv:101215708 1 428 + 428 Gaps:6 99.30 431 78.74 0.0 tRNA-dihydrouridine synthase A-like
blastp_kegg lcl|cit:102613387 1 430 + 430 Gaps:1 98.85 436 77.73 0.0 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|tcc:TCM_005867 1 430 + 430 Gaps:6 100.00 436 77.75 0.0 FMN-linked oxidoreductases superfamily protein isoform 1
blastp_kegg lcl|gmx:100779457 1 428 + 428 Gaps:1 99.30 430 77.52 0.0 uncharacterized LOC100779457
blastp_kegg lcl|pper:PRUPE_ppa007116mg 60 430 + 371 none 97.38 381 85.44 0.0 hypothetical protein
blastp_kegg lcl|fve:101299412 2 430 + 429 Gaps:9 100.00 424 77.12 0.0 tRNA-dihydrouridine synthase A-like isoform 1
blastp_kegg lcl|pmum:103330450 55 430 + 376 Gaps:7 86.26 444 83.55 0.0 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|pvu:PHAVU_011G009800g 1 428 + 428 none 99.30 431 74.53 0.0 hypothetical protein
blastp_pdb 3b0u_Y 63 366 + 304 Gaps:11 83.71 350 38.57 8e-59 mol:protein length:350 tRNA-dihydrouridine synthase
blastp_pdb 3b0u_X 63 366 + 304 Gaps:11 83.71 350 38.57 8e-59 mol:protein length:350 tRNA-dihydrouridine synthase
blastp_pdb 3b0p_B 63 366 + 304 Gaps:11 83.71 350 38.57 8e-59 mol:protein length:350 tRNA-dihydrouridine synthase
blastp_pdb 3b0p_A 63 366 + 304 Gaps:11 83.71 350 38.57 8e-59 mol:protein length:350 tRNA-dihydrouridine synthase
blastp_pdb 3b0v_D 63 366 + 304 Gaps:11 80.72 363 38.57 2e-58 mol:protein length:363 tRNA-dihydrouridine synthase
blastp_pdb 3b0v_C 63 366 + 304 Gaps:11 80.72 363 38.57 2e-58 mol:protein length:363 tRNA-dihydrouridine synthase
blastp_pdb 1vhn_A 69 351 + 283 Gaps:36 82.70 318 26.62 1e-13 mol:protein length:318 putative flavin oxidoreducatase
blastp_uniprot_sprot sp|Q87L85|DUSA_VIBPA 67 393 + 327 Gaps:9 97.55 326 42.45 1e-76 tRNA-dihydrouridine synthase A OS Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN dusA PE 3 SV 1
blastp_uniprot_sprot sp|Q8CWK7|DUSA_VIBVU 67 393 + 327 Gaps:13 97.55 326 42.45 3e-76 tRNA-dihydrouridine synthase A OS Vibrio vulnificus (strain CMCP6) GN dusA PE 3 SV 2
blastp_uniprot_sprot sp|Q8Z1T1|DUSA_SALTI 63 391 + 329 Gaps:10 96.69 332 42.99 8e-76 tRNA-dihydrouridine synthase A OS Salmonella typhi GN dusA PE 3 SV 1
blastp_uniprot_sprot sp|Q8ZKH4|DUSA_SALTY 63 391 + 329 Gaps:10 96.69 332 42.68 4e-75 tRNA-dihydrouridine synthase A OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN dusA PE 3 SV 1
blastp_uniprot_sprot sp|Q9KUX9|DUSA_VIBCH 67 390 + 324 Gaps:9 96.33 327 41.90 5e-75 tRNA-dihydrouridine synthase A OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN dusA PE 3 SV 1
blastp_uniprot_sprot sp|Q8EAJ0|DUSA_SHEON 67 366 + 300 Gaps:10 86.57 335 44.48 2e-74 tRNA-dihydrouridine synthase A OS Shewanella oneidensis (strain MR-1) GN dusA PE 3 SV 1
blastp_uniprot_sprot sp|Q7UBC5|DUSA_SHIFL 67 391 + 325 Gaps:9 95.76 330 42.72 4e-74 tRNA-dihydrouridine synthase A OS Shigella flexneri GN dusA PE 3 SV 2
blastp_uniprot_sprot sp|P32695|DUSA_ECOLI 67 391 + 325 Gaps:9 95.76 330 42.72 8e-74 tRNA-dihydrouridine synthase A OS Escherichia coli (strain K12) GN dusA PE 3 SV 3
blastp_uniprot_sprot sp|Q8X5V6|DUSA_ECO57 67 391 + 325 Gaps:9 95.76 330 42.72 8e-74 tRNA-dihydrouridine synthase A OS Escherichia coli O157:H7 GN dusA PE 3 SV 2
blastp_uniprot_sprot sp|Q8FB30|DUSA_ECOL6 67 391 + 325 Gaps:9 95.47 331 42.41 1e-73 tRNA-dihydrouridine synthase A OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN dusA PE 3 SV 1
rpsblast_cdd gnl|CDD|183323 61 366 + 306 Gaps:20 89.49 333 46.64 1e-106 PRK11815 PRK11815 tRNA-dihydrouridine synthase A Provisional.
rpsblast_cdd gnl|CDD|129825 67 391 + 325 Gaps:11 99.37 318 42.72 6e-77 TIGR00742 yjbN tRNA dihydrouridine synthase A. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes possibly dehydrogenases nifR3 family). It represents a distinct subset by a set of shared unique motifs a conserved pattern of insertions/deletions relative to other nifR3 homologs and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria a spirochete a cyanobacterium and Deinococcus radiodurans. NifR3 itself a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
rpsblast_cdd gnl|CDD|73368 67 300 + 234 Gaps:16 95.24 231 32.73 1e-58 cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5 6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities which may overlap. 1VHN a putative flavin oxidoreductase has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present..

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 69 377 309 PF01207 none Dihydrouridine synthase (Dus) IPR001269
SUPERFAMILY 66 367 302 SSF51395 none none none
PANTHER 61 378 318 PTHR11082:SF29 none none none
PANTHER 61 378 318 PTHR11082 none none IPR001269
ProSitePatterns 150 169 20 PS01136 none Uncharacterized protein family UPF0034 signature. IPR018517
Gene3D 63 302 240 G3DSA:3.20.20.70 none none IPR013785

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting