Protein : Qrob_P0311930.2 Q. robur
Protein Identifier  ? Qrob_P0311930.2 Organism . Name  Quercus robur
Score  90.2 Score Type  egn
Protein Description  (M=1) K14557 - U3 small nucleolar RNA-associated protein 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 656  
Kegg Orthology  K14557
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa018565mg 1 651 + 651 Gaps:5 99.09 658 72.85 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014465mg 1 651 + 651 Gaps:3 93.54 697 72.39 0.0 hypothetical protein
blastp_kegg lcl|cit:102625015 1 651 + 651 Gaps:3 99.39 656 72.24 0.0 U3 small nucleolar RNA-associated protein 6 homolog
blastp_kegg lcl|vvi:100267580 1 655 + 655 Gaps:7 100.00 652 73.16 0.0 U3 small nucleolar RNA-associated protein 6 homolog-like
blastp_kegg lcl|pmum:103326557 1 651 + 651 Gaps:5 99.54 655 72.24 0.0 U3 small nucleolar RNA-associated protein 6 homolog
blastp_kegg lcl|fve:101297150 1 652 + 652 Gaps:5 99.69 655 69.22 0.0 U3 small nucleolar RNA-associated protein 6 homolog
blastp_kegg lcl|pvu:PHAVU_003G080200g 1 655 + 655 Gaps:6 99.85 656 67.94 0.0 hypothetical protein
blastp_kegg lcl|cam:101497116 1 655 + 655 Gaps:13 100.00 656 68.90 0.0 U3 small nucleolar RNA-associated protein 6 homolog
blastp_kegg lcl|rcu:RCOM_0903860 1 651 + 651 Gaps:4 99.23 652 70.63 0.0 hepatocellular carcinoma-associated antigen putative
blastp_kegg lcl|tcc:TCM_030253 1 651 + 651 Gaps:10 99.38 649 69.77 0.0 HAT helix U3 small nucleolar RNA-associated protein 6
blastp_uniprot_sprot sp|Q9NYH9|UTP6_HUMAN 1 648 + 648 Gaps:92 97.49 597 28.35 4e-45 U3 small nucleolar RNA-associated protein 6 homolog OS Homo sapiens GN UTP6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VCY6|UTP6_MOUSE 1 648 + 648 Gaps:91 97.65 597 27.96 4e-44 U3 small nucleolar RNA-associated protein 6 homolog OS Mus musculus GN Utp6 PE 2 SV 1
blastp_uniprot_sprot sp|O60188|UTP6_SCHPO 1 203 + 203 Gaps:9 40.16 488 38.27 6e-33 U3 small nucleolar RNA-associated protein 6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN utp6 PE 3 SV 1
blastp_uniprot_sprot sp|Q02354|UTP6_YEAST 5 256 + 252 Gaps:29 52.50 440 31.17 1e-28 U3 small nucleolar RNA-associated protein 6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UTP6 PE 1 SV 2
blastp_uniprot_sprot sp|Q54WN5|UTP6_DICDI 3 467 + 465 Gaps:62 73.07 609 26.29 2e-22 U3 small nucleolar RNA-associated protein 6 homolog OS Dictyostelium discoideum GN utp6 PE 1 SV 1
rpsblast_cdd gnl|CDD|34790 1 280 + 280 Gaps:21 64.14 435 28.32 1e-36 COG5191 COG5191 Uncharacterized conserved protein contains HAT (Half-A-TPR) repeat [General function prediction only].
rpsblast_cdd gnl|CDD|192109 9 100 + 92 Gaps:9 100.00 83 48.19 2e-20 pfam08640 U3_assoc_6 U3 small nucleolar RNA-associated protein 6. This is a family of U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA.
rpsblast_kog gnl|CDD|37607 1 650 + 650 Gaps:87 99.82 568 33.33 1e-116 KOG2396 KOG2396 KOG2396 HAT (Half-A-TPR) repeat-containing protein [General function prediction only].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 223 258 36 Coil none none none
PANTHER 2 645 644 PTHR23271 none none none
SUPERFAMILY 23 205 183 SSF48452 none none none
Coils 2 23 22 Coil none none none
Gene3D 133 199 67 G3DSA:1.25.40.10 none none IPR011990
Gene3D 420 461 42 G3DSA:1.25.40.10 none none IPR011990
Gene3D 546 572 27 G3DSA:1.25.40.10 none none IPR011990
Gene3D 337 368 32 G3DSA:1.25.40.10 none none IPR011990
Pfam 9 88 80 PF08640 none U3 small nucleolar RNA-associated protein 6 IPR013949
SUPERFAMILY 319 646 328 SSF48452 none none none
SMART 593 625 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 163 195 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 434 467 34 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 128 160 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 95 127 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 553 585 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 349 380 32 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 479 513 35 SM00386 none HAT (Half-A-TPR) repeats IPR003107

0 Localization

0 Qtllist

0 Targeting