Protein : Qrob_P0307390.2 Q. robur
Protein Identifier  ? Qrob_P0307390.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=4) K16900 - two pore calcium channel protein, plant Gene Prediction Quality  validated
Protein length 

Sequence

Length: 358  
Kegg Orthology  K16900
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0005245 voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_008109 11 344 + 334 Gaps:20 47.76 737 75.85 5e-173 Two-pore channel 1
blastp_kegg lcl|cic:CICLE_v10014388mg 9 346 + 338 Gaps:19 47.92 745 73.95 2e-172 hypothetical protein
blastp_kegg lcl|cit:102609722 9 346 + 338 Gaps:19 47.92 745 73.95 2e-172 two pore calcium channel protein 1-like
blastp_kegg lcl|fve:101302850 9 343 + 335 Gaps:19 48.03 737 74.86 2e-170 two pore calcium channel protein 1-like
blastp_kegg lcl|pper:PRUPE_ppa001980mg 9 344 + 336 Gaps:19 55.21 643 71.55 3e-165 hypothetical protein
blastp_kegg lcl|csv:101206980 9 344 + 336 Gaps:19 48.10 738 70.42 4e-165 two pore calcium channel protein 1-like
blastp_kegg lcl|brp:103846557 11 344 + 334 Gaps:19 47.83 738 69.12 5e-165 two pore calcium channel protein 1
blastp_kegg lcl|eus:EUTSA_v10029480mg 9 344 + 336 Gaps:19 49.86 712 68.17 7e-164 hypothetical protein
blastp_kegg lcl|pmum:103328451 9 344 + 336 Gaps:19 48.63 730 70.99 1e-162 two pore calcium channel protein 1
blastp_kegg lcl|cmo:103495512 9 344 + 336 Gaps:19 47.78 743 71.27 3e-162 two pore calcium channel protein 1B
blastp_uniprot_sprot sp|Q94KI8|TPC1_ARATH 11 344 + 334 Gaps:19 48.16 733 67.14 4e-162 Two pore calcium channel protein 1 OS Arabidopsis thaliana GN TPC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q75VR1|TPC1A_TOBAC 9 343 + 335 Gaps:19 48.16 735 64.69 3e-155 Two pore calcium channel protein 1A OS Nicotiana tabacum GN TPC1A PE 2 SV 1
blastp_uniprot_sprot sp|Q75VR0|TPC1B_TOBAC 9 343 + 335 Gaps:19 48.16 735 64.41 4e-155 Two pore calcium channel protein 1B OS Nicotiana tabacum GN TPC1B PE 2 SV 1
blastp_uniprot_sprot sp|Q5QM84|TPC1_ORYSJ 9 345 + 337 Gaps:19 47.03 757 62.64 5e-138 Two pore calcium channel protein 1 OS Oryza sativa subsp. japonica GN TPC1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6YLX9|TPC1_WHEAT 9 343 + 335 Gaps:23 47.17 742 63.14 2e-134 Two pore calcium channel protein 1 OS Triticum aestivum GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6S5H8|TPC1_HORVU 9 343 + 335 Gaps:23 47.17 742 62.29 9e-132 Two pore calcium channel protein 1 OS Hordeum vulgare GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9EQJ0|TPC1_MOUSE 20 343 + 324 Gaps:54 42.35 817 27.46 3e-17 Two pore calcium channel protein 1 OS Mus musculus GN Tpcn1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9WTN5|TPC1_RAT 20 343 + 324 Gaps:58 42.35 817 28.03 8e-17 Two pore calcium channel protein 1 OS Rattus norvegicus GN Tpcn1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ULQ1|TPC1_HUMAN 20 343 + 324 Gaps:46 42.40 816 28.90 8e-16 Two pore calcium channel protein 1 OS Homo sapiens GN TPCN1 PE 1 SV 3
blastp_uniprot_sprot sp|Q02343|CAC1E_RABIT 97 342 + 246 Gaps:72 20.05 2259 28.04 1e-15 Voltage-dependent R-type calcium channel subunit alpha-1E OS Oryctolagus cuniculus GN CACNA1E PE 2 SV 1
rpsblast_cdd gnl|CDD|201279 138 323 + 186 Gaps:21 99.48 194 25.91 2e-15 pfam00520 Ion_trans Ion transport protein. This family contains Sodium Potassium Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices.
rpsblast_kog gnl|CDD|37512 33 330 + 298 Gaps:71 43.72 1592 23.42 3e-41 KOG2301 KOG2301 KOG2301 Voltage-gated Ca2+ channels alpha1 subunits [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|37513 103 342 + 240 Gaps:82 26.43 1956 24.76 4e-16 KOG2302 KOG2302 KOG2302 T-type voltage-gated Ca2+ channel pore-forming alpha1I subunit [Inorganic ion transport and metabolism Signal transduction mechanisms].

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 220 238 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 239 262 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 189 199 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 5 34 30 PTHR10037:SF92 none none IPR028801
Pfam 138 323 186 PF00520 none Ion transport protein IPR005821
Phobius 325 357 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 263 300 38 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 170 188 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 99 261 163 SSF81324 none none none
SUPERFAMILY 290 327 38 SSF81324 none none none
Phobius 200 219 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 164 169 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 82 335 254 PTHR10037 none none none
PANTHER 5 34 30 PTHR10037 none none none
Gene3D 11 80 70 G3DSA:1.10.238.10 none none IPR011992
Phobius 103 120 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 82 335 254 PTHR10037:SF92 none none IPR028801
Phobius 1 102 102 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 301 324 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 34 69 36 PS50222 none EF-hand calcium-binding domain profile. IPR002048
SUPERFAMILY 10 82 73 SSF47473 none none none
Phobius 140 163 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 102 215 114 G3DSA:1.20.120.350 none none IPR027359
Phobius 121 139 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

5 Localization

Analysis Start End Length
TMHMM 225 247 22
TMHMM 172 194 22
TMHMM 140 159 19
TMHMM 301 323 22
TMHMM 98 120 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting