Protein : Qrob_P0301030.2 Q. robur
Protein Identifier  ? Qrob_P0301030.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.1.26.12 - Ribonuclease E. Code Enzyme  EC:3.1.26.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 951  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0030246 carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
GO:2001070 starch binding Interacting selectively and non-covalently with starch.
GO:0004540 ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10014166mg 1 950 + 950 Gaps:39 98.02 960 73.33 0.0 hypothetical protein
blastp_kegg lcl|cit:102607608 1 950 + 950 Gaps:39 93.26 1009 73.11 0.0 ribonuclease E/G-like protein chloroplastic-like
blastp_kegg lcl|vvi:100256290 2 950 + 949 Gaps:32 92.93 1019 71.49 0.0 uncharacterized LOC100256290
blastp_kegg lcl|mdm:103421707 1 950 + 950 Gaps:69 91.61 1049 70.34 0.0 ribonuclease E/G-like protein chloroplastic
blastp_kegg lcl|rcu:RCOM_1213430 6 950 + 945 Gaps:23 99.07 963 68.97 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_002455 1 950 + 950 Gaps:39 92.91 1015 71.37 0.0 RNAse E/G-like
blastp_kegg lcl|pop:POPTR_0014s16820g 1 950 + 950 Gaps:46 94.27 995 70.47 0.0 POPTRDRAFT_247130 glycoside hydrolase starch-binding domain-containing family protein
blastp_kegg lcl|pper:PRUPE_ppa000850mg 1 950 + 950 Gaps:68 98.78 982 68.97 0.0 hypothetical protein
blastp_kegg lcl|pmum:103329125 1 950 + 950 Gaps:83 92.17 1060 68.99 0.0 ribonuclease E/G-like protein chloroplastic
blastp_kegg lcl|gmx:100809907 1 950 + 950 Gaps:27 94.30 983 69.26 0.0 ribonuclease E/G-like protein chloroplastic-like
blastp_pdb 2vrt_D 482 837 + 356 Gaps:19 67.39 509 36.15 2e-60 mol:protein length:509 RIBONUCLEASE E
blastp_pdb 2vrt_C 482 837 + 356 Gaps:19 67.39 509 36.15 2e-60 mol:protein length:509 RIBONUCLEASE E
blastp_pdb 2vrt_B 482 837 + 356 Gaps:19 67.39 509 36.15 2e-60 mol:protein length:509 RIBONUCLEASE E
blastp_pdb 2vrt_A 482 837 + 356 Gaps:19 67.39 509 36.15 2e-60 mol:protein length:509 RIBONUCLEASE E
blastp_pdb 2vmk_D 482 837 + 356 Gaps:19 66.60 515 36.15 3e-60 mol:protein length:515 RIBONUCLEASE E
blastp_pdb 2vmk_C 482 837 + 356 Gaps:19 66.60 515 36.15 3e-60 mol:protein length:515 RIBONUCLEASE E
blastp_pdb 2vmk_B 482 837 + 356 Gaps:19 66.60 515 36.15 3e-60 mol:protein length:515 RIBONUCLEASE E
blastp_pdb 2vmk_A 482 837 + 356 Gaps:19 66.60 515 36.15 3e-60 mol:protein length:515 RIBONUCLEASE E
blastp_pdb 2c4r_L 482 837 + 356 Gaps:19 66.34 517 36.15 3e-60 mol:protein length:517 RIBONUCLEASE E
blastp_pdb 2c0b_L 482 837 + 356 Gaps:19 66.34 517 36.15 3e-60 mol:protein length:517 RIBONUCLEASE E
blastp_uniprot_sprot sp|F4IV66|RNE_ARATH 12 950 + 939 Gaps:58 92.01 1001 63.19 0.0 Ribonuclease E/G-like protein chloroplastic OS Arabidopsis thaliana GN RNE PE 1 SV 1
blastp_uniprot_sprot sp|P44443|RNE_HAEIN 484 810 + 327 Gaps:14 33.90 935 38.17 9e-62 Ribonuclease E OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN rne PE 3 SV 1
blastp_uniprot_sprot sp|P21513|RNE_ECOLI 482 837 + 356 Gaps:21 32.33 1061 37.32 2e-57 Ribonuclease E OS Escherichia coli (strain K12) GN rne PE 1 SV 6
blastp_uniprot_sprot sp|P45175|RNG_HAEIN 482 827 + 346 Gaps:13 68.23 491 38.21 7e-53 Ribonuclease G OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN rng PE 3 SV 1
blastp_uniprot_sprot sp|P0A9J3|RNG_SHIFL 482 832 + 351 Gaps:15 69.53 489 37.65 2e-51 Ribonuclease G OS Shigella flexneri GN rng PE 3 SV 2
blastp_uniprot_sprot sp|P0A9J0|RNG_ECOLI 482 832 + 351 Gaps:15 69.53 489 37.65 2e-51 Ribonuclease G OS Escherichia coli (strain K12) GN rng PE 1 SV 2
blastp_uniprot_sprot sp|P0A9J1|RNG_ECOL6 482 832 + 351 Gaps:15 69.53 489 37.65 2e-51 Ribonuclease G OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN rng PE 3 SV 2
blastp_uniprot_sprot sp|P0A9J2|RNG_ECO57 482 832 + 351 Gaps:15 69.53 489 37.65 2e-51 Ribonuclease G OS Escherichia coli O157:H7 GN rng PE 3 SV 2
blastp_uniprot_sprot sp|Q8K9J9|RNE_BUCAP 482 837 + 356 Gaps:19 35.43 968 31.49 8e-51 Ribonuclease E OS Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN rne PE 3 SV 1
blastp_uniprot_sprot sp|Q89AH3|RNE_BUCBP 482 787 + 306 Gaps:15 72.44 410 33.33 9e-50 Putative ribonuclease E OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN rne PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 10 119 110 PS51166 none CBM20 (carbohydrate binding type-20) domain profile. IPR002044
PANTHER 82 371 290 PTHR30001 none none none
Gene3D 14 117 104 G3DSA:2.60.40.10 none none IPR013783
PANTHER 82 371 290 PTHR30001:SF1 none none none
Pfam 510 790 281 PF10150 none Ribonuclease E/G family IPR019307
SUPERFAMILY 305 344 40 SSF50249 none none IPR012340
SUPERFAMILY 469 511 43 SSF50249 none none IPR012340
Pfam 17 105 89 PF00686 none Starch binding domain IPR002044
TIGRFAM 278 821 544 TIGR00757 none RNaseEG: ribonuclease, Rne/Rng family IPR004659
PANTHER 475 936 462 PTHR30001 none none none
SUPERFAMILY 13 117 105 SSF49452 none none IPR013784
SMART 15 108 94 SM01065 none Starch binding domain IPR002044
PANTHER 475 936 462 PTHR30001:SF1 none none none
Gene3D 299 346 48 G3DSA:2.40.50.140 none none IPR012340
Gene3D 471 513 43 G3DSA:2.40.50.140 none none IPR012340

0 Localization

0 Qtllist

0 Targeting