Protein : Qrob_P0297900.2 Q. robur
Protein Identifier  ? Qrob_P0297900.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K05656 - ATP-binding cassette, subfamily B (MDR/TAP), member 9 Code Enzyme  EC:3.6.3.43
Gene Prediction Quality  validated Protein length 

Sequence

Length: 287  
Kegg Orthology  K05656
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0005765 lysosomal membrane The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
GO:0015440 peptide-transporting ATPase activity Catalysis of the reaction: ATP + H2O + peptide(in) = ADP + phosphate + peptide(out). Peptides exported include alpha-hemolysin, cyclolysin, colicin V and siderophores from Gram-negative bacteria, and bacteriocin, subtilin, competence factor and pediocin from Gram-positive bacteria.
GO:0015833 peptide transport The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103404558 7 283 + 277 Gaps:66 48.53 682 57.10 4e-107 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa002672mg 7 280 + 274 Gaps:66 50.77 646 56.40 4e-105 hypothetical protein
blastp_kegg lcl|pxb:103959729 7 283 + 277 Gaps:66 47.83 692 56.80 2e-104 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|pxb:103965797 7 283 + 277 Gaps:66 48.53 682 56.50 7e-104 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|gmx:100797529 16 280 + 265 Gaps:64 47.03 674 56.15 1e-101 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|pmum:103330161 7 280 + 274 Gaps:66 47.95 684 56.10 2e-101 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|vvi:100247338 11 283 + 273 Gaps:64 49.39 658 52.31 2e-96 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|cam:101499558 16 280 + 265 Gaps:74 46.82 677 53.00 4e-94 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|cit:102618671 16 286 + 271 Gaps:72 46.47 695 53.25 6e-94 ABC transporter B family member 26 chloroplastic-like
blastp_kegg lcl|tcc:TCM_016965 16 283 + 268 Gaps:64 47.20 678 53.44 1e-93 ABC transporter B family member 26
blastp_uniprot_sprot sp|Q8RY46|AB26B_ARATH 16 283 + 268 Gaps:68 45.71 700 50.62 5e-87 ABC transporter B family member 26 chloroplastic OS Arabidopsis thaliana GN ABCB26 PE 1 SV 1
blastp_uniprot_sprot sp|Q9QYJ4|ABCB9_RAT 37 280 + 244 Gaps:42 34.91 762 29.32 4e-20 ATP-binding cassette sub-family B member 9 OS Rattus norvegicus GN Abcb9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JJ59|ABCB9_MOUSE 37 280 + 244 Gaps:42 34.91 762 29.32 5e-20 ATP-binding cassette sub-family B member 9 OS Mus musculus GN Abcb9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NP78|ABCB9_HUMAN 37 280 + 244 Gaps:42 34.73 766 28.57 1e-19 ATP-binding cassette sub-family B member 9 OS Homo sapiens GN ABCB9 PE 1 SV 1
blastp_uniprot_sprot sp|Q54BU4|ABCB1_DICDI 54 280 + 227 Gaps:37 27.50 909 26.00 3e-15 ABC transporter B family member 1 OS Dictyostelium discoideum GN abcB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q54W24|ABCB4_DICDI 60 280 + 221 Gaps:37 31.81 767 23.77 7e-12 ABC transporter B family member 4 OS Dictyostelium discoideum GN abcB4 PE 3 SV 1
blastp_uniprot_sprot sp|Q56A55|ABCB8_DANRE 56 280 + 225 Gaps:35 35.01 714 22.00 2e-09 ATP-binding cassette sub-family B member 8 mitochondrial OS Danio rerio GN abcb8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9PEE7|MSBA_XYLFA 50 280 + 231 Gaps:46 42.95 589 26.09 4e-09 Lipid A export ATP-binding/permease protein MsbA OS Xylella fastidiosa (strain 9a5c) GN msbA PE 3 SV 1
blastp_uniprot_sprot sp|Q87EF0|MSBA_XYLFT 50 280 + 231 Gaps:40 42.95 589 24.51 1e-08 Lipid A export ATP-binding/permease protein MsbA OS Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN msbA PE 3 SV 1
blastp_uniprot_sprot sp|Q9FNU2|AB25B_ORYSJ 20 280 + 261 Gaps:49 43.37 641 24.10 1e-08 ABC transporter B family member 25 OS Oryza sativa subsp. japonica GN OsABCB25 PE 2 SV 1
rpsblast_cdd gnl|CDD|162132 52 280 + 229 Gaps:37 35.44 711 28.17 3e-22 TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
rpsblast_cdd gnl|CDD|31327 58 283 + 226 Gaps:38 43.74 567 24.19 6e-14 COG1132 MdlB ABC-type multidrug transport system ATPase and permease components [Defense mechanisms].
rpsblast_cdd gnl|CDD|131259 59 280 + 222 Gaps:47 42.88 576 25.51 1e-12 TIGR02204 MsbA_rel ABC transporter permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
rpsblast_cdd gnl|CDD|163509 58 161 + 104 Gaps:16 14.58 686 32.00 6e-07 TIGR03797 NHLM_micro_ABC2 NHLM bacteriocin system ABC transporter ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796) which has an N-terminal leader sequence cleavage domain and an HlyD homolog (TIGR03794). In a number of genomes members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins members of this protein family and its partners TIGR03794 and TIGR03796 and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes.
rpsblast_kog gnl|CDD|35281 1 286 + 286 Gaps:55 42.04 716 25.91 4e-36 KOG0058 KOG0058 KOG0058 Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|35278 54 286 + 233 Gaps:77 41.94 1228 21.55 8e-15 KOG0055 KOG0055 KOG0055 Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 50 152 103 G3DSA:1.20.1560.10 none none none
Phobius 18 26 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 111 133 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 56 280 225 PTHR24221:SF181 none none IPR030254
ProSiteProfiles 58 154 97 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
PANTHER 56 280 225 PTHR24221 none none none
Phobius 134 286 153 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 27 110 84 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 56 154 99 PF00664 none ABC transporter transmembrane region IPR011527
SUPERFAMILY 43 246 204 SSF90123 none none IPR011527

1 Localization

Analysis Start End Length
TMHMM 112 134 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 2 0.928 0.016 NON-PLANT 26