Protein : Qrob_P0294600.2 Q. robur
Protein Identifier  ? Qrob_P0294600.2 Organism . Name  Quercus robur
Score  90.0 Score Type  egn
Protein Description  (M=1) K12845 - U4/U6 small nuclear ribonucleoprotein SNU13 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 115  
Kegg Orthology  K12845
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341057 1 76 + 76 none 59.38 128 90.79 2e-41 NHP2-like protein 1
blastp_kegg lcl|pmum:103336611 1 76 + 76 none 59.38 128 90.79 2e-41 NHP2-like protein 1
blastp_kegg lcl|pper:PRUPE_ppa013346mg 1 76 + 76 none 59.38 128 90.79 2e-41 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa013336mg 1 76 + 76 none 59.38 128 90.79 2e-41 hypothetical protein
blastp_kegg lcl|cvr:CHLNCDRAFT_31020 5 76 + 72 none 57.60 125 93.06 2e-39 ribosomal protein L7
blastp_kegg lcl|bfo:BRAFLDRAFT_68109 6 76 + 71 none 54.20 131 85.92 6e-37 hypothetical protein
blastp_kegg lcl|xtr:394590 1 76 + 76 none 59.38 128 80.26 4e-36 nhp2l1 fa-1 fa1 hoip nhpx otk27 snrnp15-5 snu13 spag12 ssfa1 NHP2 non-histone chromosome protein 2-like 1
blastp_kegg lcl|xla:380416 1 76 + 76 none 59.38 128 80.26 6e-36 nhp2l1-b fa-1 fa1 hoip nhpx otk27 snrnp15-5 snu13 spag12 ssfa1 NHP2 non-histone chromosome protein 2-like 1
blastp_kegg lcl|mdo:100028876 1 76 + 76 none 59.38 128 78.95 8e-36 NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
blastp_kegg lcl|xla:495253 1 76 + 76 none 59.38 128 78.95 9e-36 nhp2l1-a fa-1 fa1 hoip nhp2l1 nhpx otk27 snrnp15-5 snu13 spag12 ssfa1 NHP2 non-histone chromosome protein 2-like 1
blastp_pdb 1e7k_B 1 76 + 76 none 59.38 128 77.63 9e-37 mol:protein length:128 15.5 KD RNA BINDING PROTEIN
blastp_pdb 1e7k_A 1 76 + 76 none 59.38 128 77.63 9e-37 mol:protein length:128 15.5 KD RNA BINDING PROTEIN
blastp_pdb 3siv_J 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siv_G 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siv_D 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siv_A 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siu_D 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siu_A 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 NHP2-like protein 1
blastp_pdb 2ozb_D 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 U4/U6.U5 tri-snRNP 15.5 kDa protein
blastp_pdb 2ozb_A 1 76 + 76 none 58.46 130 77.63 9e-37 mol:protein length:130 U4/U6.U5 tri-snRNP 15.5 kDa protein
blastp_uniprot_sprot sp|Q6P8E9|NH2L1_XENTR 1 76 + 76 none 59.38 128 80.26 1e-37 NHP2-like protein 1 OS Xenopus tropicalis GN nhp2l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XH16|NH2L1_XENLA 1 76 + 76 none 59.38 128 78.95 3e-37 NHP2-like protein 1 OS Xenopus laevis GN nhp2l1 PE 2 SV 1
blastp_uniprot_sprot sp|P55770|NH2L1_RAT 1 76 + 76 none 59.38 128 77.63 3e-36 NHP2-like protein 1 OS Rattus norvegicus GN Nhp2l1 PE 2 SV 4
blastp_uniprot_sprot sp|Q9D0T1|NH2L1_MOUSE 1 76 + 76 none 59.38 128 77.63 3e-36 NHP2-like protein 1 OS Mus musculus GN Nhp2l1 PE 2 SV 4
blastp_uniprot_sprot sp|Q4R5C6|NH2L1_MACFA 1 76 + 76 none 59.38 128 77.63 3e-36 NHP2-like protein 1 OS Macaca fascicularis GN NHP2L1 PE 2 SV 1
blastp_uniprot_sprot sp|P55769|NH2L1_HUMAN 1 76 + 76 none 59.38 128 77.63 3e-36 NHP2-like protein 1 OS Homo sapiens GN NHP2L1 PE 1 SV 3
blastp_uniprot_sprot sp|Q3B8S0|NH2L1_BOVIN 1 76 + 76 none 59.38 128 77.63 3e-36 NHP2-like protein 1 OS Bos taurus GN NHP2L1 PE 2 SV 3
blastp_uniprot_sprot sp|O74690|SNU13_SCHPO 5 76 + 72 none 57.60 125 79.17 4e-35 13 kDa ribonucleoprotein-associated protein OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snu13 PE 3 SV 1
blastp_uniprot_sprot sp|P39990|SNU13_YEAST 5 76 + 72 none 57.14 126 79.17 3e-34 13 kDa ribonucleoprotein-associated protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SNU13 PE 1 SV 1
blastp_uniprot_sprot sp|Q757T2|SNU13_ASHGO 7 76 + 70 none 55.12 127 78.57 7e-34 13 kDa ribonucleoprotein-associated protein OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN SNU13 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 77 95 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 5 76 72 G3DSA:3.30.1330.30 none none IPR029064
Phobius 96 114 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 76 76 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 8 21 14 PR00883 none High mobility group-like nuclear protein signature IPR002415
PRINTS 21 36 16 PR00883 none High mobility group-like nuclear protein signature IPR002415
PRINTS 38 48 11 PR00883 none High mobility group-like nuclear protein signature IPR002415
SUPERFAMILY 6 76 71 SSF55315 none none IPR029064
PRINTS 35 49 15 PR00881 none Ribosomal protein L7A/RS6 family signature IPR018492
PRINTS 54 67 14 PR00881 none Ribosomal protein L7A/RS6 family signature IPR018492
PANTHER 4 76 73 PTHR23105 none none none
Pfam 22 76 55 PF01248 none Ribosomal protein L7Ae/L30e/S12e/Gadd45 family IPR004038

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting