Protein : Qrob_P0294250.2 Q. robur
Protein Identifier  ? Qrob_P0294250.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03541 - photosystem II 10kDa protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 112  
Kegg Orthology  K03541
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009654 photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103325873 1 111 + 111 Gaps:28 100.00 139 65.47 1e-47 photosystem II 10 kDa polypeptide chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa013107mg 1 111 + 111 Gaps:28 100.00 139 65.47 1e-46 hypothetical protein
blastp_kegg lcl|fve:101305541 1 111 + 111 Gaps:28 100.00 139 63.31 1e-43 photosystem II 10 kDa polypeptide chloroplastic-like
blastp_kegg lcl|pxb:103936181 1 111 + 111 Gaps:29 100.00 140 62.86 9e-42 photosystem II 10 kDa polypeptide chloroplastic-like
blastp_kegg lcl|pxb:103951972 1 110 + 110 Gaps:29 100.00 139 61.15 2e-41 photosystem II 10 kDa polypeptide chloroplastic-like
blastp_kegg lcl|pop:POPTR_0001s42970g 1 111 + 111 Gaps:28 100.00 137 59.85 5e-41 Photosystem II 10 kDa polypeptide family protein
blastp_kegg lcl|mdm:103428089 1 111 + 111 Gaps:29 100.00 140 60.00 2e-40 photosystem II 10 kDa polypeptide chloroplastic-like
blastp_kegg lcl|pop:POPTR_0011s14540g 1 111 + 111 Gaps:28 100.00 137 59.12 2e-40 POPTRDRAFT_569170 Photosystem II 10 kDa polypeptide family protein
blastp_kegg lcl|sot:102586254 1 111 + 111 Gaps:29 100.00 138 57.97 1e-37 PSBR photosystem II 10 kDa polypeptide chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_005G055200g 1 111 + 111 Gaps:28 100.00 139 63.31 3e-37 hypothetical protein
blastp_uniprot_sprot sp|Q40519|PSBR_TOBAC 1 111 + 111 Gaps:31 100.00 136 59.56 2e-40 Photosystem II 10 kDa polypeptide chloroplastic OS Nicotiana tabacum GN PSBR PE 2 SV 1
blastp_uniprot_sprot sp|P06183|PSBR_SOLTU 1 111 + 111 Gaps:29 100.00 138 57.97 5e-39 Photosystem II 10 kDa polypeptide chloroplastic OS Solanum tuberosum GN PSBR PE 2 SV 1
blastp_uniprot_sprot sp|Q40163|PSBR_SOLLC 1 111 + 111 Gaps:29 100.00 138 57.25 1e-37 Photosystem II 10 kDa polypeptide chloroplastic OS Solanum lycopersicum GN PSBR PE 2 SV 1
blastp_uniprot_sprot sp|P27202|PSBR_ARATH 1 111 + 111 Gaps:29 100.00 140 55.71 5e-36 Photosystem II 10 kDa polypeptide chloroplastic OS Arabidopsis thaliana GN PSBR PE 1 SV 1
blastp_uniprot_sprot sp|P49108|PSBR_BRACM 1 111 + 111 Gaps:30 100.00 141 52.48 2e-34 Photosystem II 10 kDa polypeptide chloroplastic OS Brassica campestris GN PSBR PE 2 SV 1
blastp_uniprot_sprot sp|P10690|PSBR_SPIOL 1 111 + 111 Gaps:29 100.00 140 54.29 6e-27 Photosystem II 10 kDa polypeptide chloroplastic OS Spinacia oleracea GN PSBR PE 2 SV 1
blastp_uniprot_sprot sp|Q40070|PSBR_HORVU 1 110 + 110 Gaps:31 99.28 138 44.53 1e-20 Photosystem II 10 kDa polypeptide chloroplastic OS Hordeum vulgare GN PSBR PE 3 SV 1
rpsblast_cdd gnl|CDD|177684 23 111 + 89 Gaps:28 100.00 117 57.26 3e-24 PLN00053 PLN00053 photosystem II subunit R Provisional.
rpsblast_cdd gnl|CDD|147071 40 111 + 72 Gaps:27 100.00 99 54.55 3e-18 pfam04725 PsbR Photosystem II 10 kDa polypeptide PsbR. This protein is associated with the oxygen-evolving complex of photosystem II. Its function in photosynthesis is not known. The C-terminal hydrophobic region functions as a thylakoid transfer signal but is not removed.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 62 111 50 PF04725 none Photosystem II 10 kDa polypeptide PsbR IPR006814
Phobius 85 104 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 84 84 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 105 111 7 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 84 106 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Mitochondrion 4 0.044 0.619 NON-PLANT 25