Protein : Qrob_P0291830.2 Q. robur
Protein Identifier  ? Qrob_P0291830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02834 - ribosome-binding factor A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 183  
Kegg Orthology  K02834
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102627982 13 181 + 169 none 73.80 229 84.02 9e-99 probable ribosome-binding factor A chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10029227mg 13 181 + 169 none 74.78 226 84.02 1e-98 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa011113mg 2 182 + 181 Gaps:2 80.27 223 80.45 3e-97 hypothetical protein
blastp_kegg lcl|pmum:103335586 2 182 + 181 Gaps:2 80.27 223 79.89 1e-96 probable ribosome-binding factor A chloroplastic
blastp_kegg lcl|pxb:103967959 3 181 + 179 Gaps:3 80.00 220 81.25 2e-96 probable ribosome-binding factor A chloroplastic
blastp_kegg lcl|pop:POPTR_0004s17120g 11 181 + 171 none 76.34 224 82.46 5e-96 POPTRDRAFT_800817 hypothetical protein
blastp_kegg lcl|tcc:TCM_006760 4 181 + 178 Gaps:1 84.43 212 82.12 1e-94 Ribosome-binding factor A family protein isoform 1
blastp_kegg lcl|rcu:RCOM_1451430 12 181 + 170 Gaps:1 76.47 221 83.43 1e-94 Ribosome-binding factor A putative
blastp_kegg lcl|pxb:103966958 12 181 + 170 none 76.92 221 80.00 3e-94 probable ribosome-binding factor A chloroplastic
blastp_kegg lcl|ath:AT4G34730 13 181 + 169 Gaps:4 76.74 215 83.03 3e-91 ribosome-binding factor A
blastp_pdb 1jos_A 63 154 + 92 Gaps:2 73.44 128 38.30 8e-15 mol:protein length:128 RIBOSOME-BINDING FACTOR A
blastp_pdb 1kkg_A 57 134 + 78 Gaps:4 74.07 108 41.25 5e-11 mol:protein length:108 ribosome-binding factor A
blastp_uniprot_sprot sp|O65693|RBFA_ARATH 13 181 + 169 Gaps:4 76.74 215 83.03 1e-92 Probable ribosome-binding factor A chloroplastic OS Arabidopsis thaliana GN At4g34730 PE 2 SV 2
blastp_uniprot_sprot sp|Q8Z0M8|RBFA_NOSS1 17 148 + 132 Gaps:12 90.23 133 47.50 2e-31 Ribosome-binding factor A OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|Q93LL7|RBFA_NOSP7 17 149 + 133 Gaps:12 87.05 139 48.76 5e-31 Ribosome-binding factor A OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|B8HWS1|RBFA_CYAP4 17 150 + 134 Gaps:12 91.04 134 47.54 5e-31 Ribosome-binding factor A OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|B0JRP8|RBFA_MICAN 17 156 + 140 Gaps:12 100.00 128 46.09 1e-30 Ribosome-binding factor A OS Microcystis aeruginosa (strain NIES-843) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|Q3M9Q8|RBFA_ANAVT 17 146 + 130 Gaps:12 88.72 133 47.46 3e-30 Ribosome-binding factor A OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|Q55625|RBFA_SYNY3 17 150 + 134 Gaps:17 87.97 133 48.72 8e-28 Ribosome-binding factor A OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|Q8DIF9|RBFA_THEEB 17 146 + 130 Gaps:12 93.65 126 48.31 1e-27 Ribosome-binding factor A OS Thermosynechococcus elongatus (strain BP-1) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|Q5N2X2|RBFA_SYNP6 17 142 + 126 Gaps:12 83.21 137 48.25 2e-27 Ribosome-binding factor A OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN rbfA PE 3 SV 1
blastp_uniprot_sprot sp|Q31RD2|RBFA_SYNE7 17 142 + 126 Gaps:12 83.21 137 48.25 2e-27 Ribosome-binding factor A OS Synechococcus elongatus (strain PCC 7942) GN rbfA PE 3 SV 1
rpsblast_cdd gnl|CDD|179054 17 147 + 131 Gaps:16 97.50 120 48.72 3e-28 PRK00521 rbfA ribosome-binding factor A Validated.
rpsblast_cdd gnl|CDD|202097 22 139 + 118 Gaps:14 100.00 104 47.12 2e-25 pfam02033 RBFA Ribosome-binding factor A.
rpsblast_cdd gnl|CDD|31199 17 147 + 131 Gaps:21 100.00 118 43.22 4e-20 COG0858 RbfA Ribosome-binding factor A [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129191 22 145 + 124 Gaps:20 96.49 114 36.36 2e-18 TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
rpsblast_cdd gnl|CDD|172345 65 153 + 89 none 72.95 122 38.20 1e-12 PRK13815 PRK13815 ribosome-binding factor A Provisional.
rpsblast_cdd gnl|CDD|184344 21 155 + 135 Gaps:20 98.47 131 31.78 1e-11 PRK13816 PRK13816 ribosome-binding factor A Provisional.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 105 126 22 PS01319 none Ribosome-binding factor A signature. IPR020053
TIGRFAM 17 144 128 TIGR00082 none rbfA: ribosome-binding factor A IPR000238
SUPERFAMILY 17 142 126 SSF89919 none none IPR023799
Pfam 22 138 117 PF02033 none Ribosome-binding factor A IPR000238
ProDom 26 126 101 PD007327 none FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA IPR000238
Gene3D 16 133 118 G3DSA:3.30.300.20 none none IPR015946

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 17   Mitochondrion 2 0.028 0.866 NON-PLANT 17