Protein : Qrob_P0291380.2 Q. robur
Protein Identifier  ? Qrob_P0291380.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K12120 - phytochrome A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1122  
Kegg Orthology  K12120
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0 Synonyms

12 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0000155 phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
GO:0000160 phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO:0042803 protein homodimerization activity Interacting selectively and non-covalently with an identical protein to form a homodimer.
GO:0018298 protein-chromophore linkage The covalent or noncovalent attachment of a chromophore to a protein.
GO:0009584 detection of visible light The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
GO:0009585 red, far-red light phototransduction The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
GO:0009881 photoreceptor activity The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
GO:0017006 protein-tetrapyrrole linkage The covalent linking of a tetrapyrrole to a protein.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344525 11 1121 + 1111 none 98.84 1124 86.41 0.0 phytochrome A
blastp_kegg lcl|vvi:100240824 14 1121 + 1108 Gaps:1 98.49 1124 86.90 0.0 PHYA phytochrome A
blastp_kegg lcl|pop:POPTR_0013s00220g 20 1121 + 1102 none 97.87 1126 87.11 0.0 POPTRDRAFT_729311 phytochrome A family protein
blastp_kegg lcl|cic:CICLE_v10027712mg 12 1120 + 1109 Gaps:3 99.02 1117 86.44 0.0 hypothetical protein
blastp_kegg lcl|cit:102616503 12 1120 + 1109 Gaps:3 99.02 1117 86.44 0.0 phytochrome A-like
blastp_kegg lcl|rcu:RCOM_1437130 20 1121 + 1102 none 98.04 1124 84.94 0.0 phytochrome A putative
blastp_kegg lcl|tcc:TCM_047056 20 1121 + 1102 Gaps:5 98.04 1121 87.26 0.0 Phytochrome A
blastp_kegg lcl|fve:101310811 20 1120 + 1101 none 97.95 1124 85.29 0.0 phytochrome A-like
blastp_kegg lcl|pxb:103930273 12 1121 + 1110 Gaps:1 98.93 1123 83.17 0.0 phytochrome A-like
blastp_kegg lcl|sly:544176 17 1117 + 1101 none 98.04 1123 82.11 0.0 phyA alternative transcript type 3
blastp_pdb 2vea_A 74 585 + 512 Gaps:57 94.81 520 31.64 1e-65 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3zq5_A 74 585 + 512 Gaps:57 94.81 520 31.44 3e-65 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3ibr_B 188 582 + 395 Gaps:65 75.25 505 33.68 1e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3ibr_A 188 582 + 395 Gaps:65 75.25 505 33.68 1e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_B 188 582 + 395 Gaps:65 75.25 505 33.68 1e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_A 188 582 + 395 Gaps:65 75.25 505 33.68 1e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_H 188 582 + 395 Gaps:65 75.25 505 33.42 9e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_G 188 582 + 395 Gaps:65 75.25 505 33.42 9e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_F 188 582 + 395 Gaps:65 75.25 505 33.42 9e-43 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_E 188 582 + 395 Gaps:65 75.25 505 33.42 9e-43 mol:protein length:505 Bacteriophytochrome
blastp_uniprot_sprot sp|P93673|PHYA_LATSA 1 1121 + 1121 none 99.73 1124 81.71 0.0 Phytochrome type A OS Lathyrus sativus GN PHYA PE 3 SV 1
blastp_uniprot_sprot sp|P33530|PHYA1_TOBAC 14 1121 + 1108 none 98.58 1124 81.77 0.0 Phytochrome A1 OS Nicotiana tabacum GN PHYA1 PE 3 SV 1
blastp_uniprot_sprot sp|P30733|PHYA_SOLTU 17 1121 + 1105 none 98.40 1123 81.18 0.0 Phytochrome A OS Solanum tuberosum GN PHYA PE 2 SV 2
blastp_uniprot_sprot sp|P14712|PHYA_ARATH 1 1121 + 1121 Gaps:1 100.00 1122 81.37 0.0 Phytochrome A OS Arabidopsis thaliana GN PHYA PE 1 SV 2
blastp_uniprot_sprot sp|P06592|PHYA_CUCPE 21 1121 + 1101 Gaps:1 97.86 1124 82.64 0.0 Phytochrome A OS Cucurbita pepo GN PHYA PE 2 SV 1
blastp_uniprot_sprot sp|P15001|PHYA_PEA 1 1121 + 1121 none 99.73 1124 81.89 0.0 Phytochrome A OS Pisum sativum GN PHYA PE 3 SV 1
blastp_uniprot_sprot sp|O49934|PHYA_POPTM 20 1121 + 1102 Gaps:9 97.87 1125 84.29 0.0 Phytochrome A OS Populus tremuloides GN PHYA PE 2 SV 1
blastp_uniprot_sprot sp|P42500|PHYA_SOYBN 23 1120 + 1098 Gaps:18 97.79 1131 79.20 0.0 Phytochrome A OS Glycine max GN PHYA PE 2 SV 1
blastp_uniprot_sprot sp|P55141|PHYA_PETCR 12 1121 + 1110 Gaps:13 98.76 1129 75.70 0.0 Phytochrome A OS Petroselinum crispum GN PHYA PE 2 SV 1
blastp_uniprot_sprot sp|P93526|PHYA_SORBI 20 1119 + 1100 Gaps:16 97.61 1131 65.49 0.0 Phytochrome a OS Sorghum bicolor GN PHYA PE 2 SV 1

42 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 623 747 125 G3DSA:3.30.450.20 none none none
Gene3D 961 1113 153 G3DSA:3.30.565.10 none none IPR003594
PANTHER 252 1120 869 PTHR24423 none none none
ProSiteProfiles 690 746 57 PS50113 none PAC domain profile. IPR000700
PRINTS 233 252 20 PR01033 none Phytochrome signature IPR001294
PRINTS 516 535 20 PR01033 none Phytochrome signature IPR001294
PRINTS 620 636 17 PR01033 none Phytochrome signature IPR001294
PRINTS 732 752 21 PR01033 none Phytochrome signature IPR001294
PRINTS 712 729 18 PR01033 none Phytochrome signature IPR001294
PRINTS 133 155 23 PR01033 none Phytochrome signature IPR001294
PRINTS 318 339 22 PR01033 none Phytochrome signature IPR001294
PRINTS 549 567 19 PR01033 none Phytochrome signature IPR001294
PRINTS 431 451 21 PR01033 none Phytochrome signature IPR001294
PRINTS 639 654 16 PR01033 none Phytochrome signature IPR001294
Pfam 897 954 58 PF00512 none His Kinase A (phospho-acceptor) domain IPR003661
SMART 894 959 66 SM00388 none His Kinase A (phosphoacceptor) domain IPR003661
Coils 398 419 22 Coil none none none
SMART 1006 1118 113 SM00387 none Histidine kinase-like ATPases IPR003594
PANTHER 252 1120 869 PTHR24423:SF414 none none none
Pfam 1006 1114 109 PF02518 none Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594
ProSiteProfiles 617 687 71 PS50112 none PAS repeat profile. IPR000014
PIRSF 1 1121 1121 PIRSF000084 none none IPR012129
Gene3D 767 872 106 G3DSA:3.30.450.20 none none none
SUPERFAMILY 764 870 107 SSF55785 none none IPR000014
SUPERFAMILY 956 1113 158 SSF55874 none none IPR003594
Pfam 69 185 117 PF08446 none PAS fold IPR013654
SUPERFAMILY 623 730 108 SSF55785 none none IPR000014
Pfam 412 588 177 PF00360 none Phytochrome region IPR013515
ProSiteProfiles 750 802 53 PS50112 none PAS repeat profile. IPR000014
ProSiteProfiles 901 1118 218 PS50109 "Reactome:REACT_1046" Histidine kinase domain profile. IPR005467

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 14   Mitochondrion 2 0.025 0.845 NON-PLANT 14