Protein : Qrob_P0289970.2 Q. robur
Protein Identifier  ? Qrob_P0289970.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0018//KOG0996 - Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning]. // Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 179  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0051276 chromosome organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330007 1 133 + 133 Gaps:3 10.76 1245 76.87 2e-56 structural maintenance of chromosomes protein 4
blastp_kegg lcl|pper:PRUPE_ppa000362mg 1 133 + 133 Gaps:3 10.76 1245 77.61 3e-56 hypothetical protein
blastp_kegg lcl|mdm:103405722 1 133 + 133 Gaps:3 10.76 1245 76.87 4e-56 structural maintenance of chromosomes protein 4
blastp_kegg lcl|pop:POPTR_0017s11950g 1 125 + 125 Gaps:1 9.87 1256 81.45 8e-56 POPTRDRAFT_577636 hypothetical protein
blastp_kegg lcl|tcc:TCM_018557 1 125 + 125 Gaps:1 9.96 1245 79.03 2e-54 Structural maintenance of chromosome 3 isoform 1
blastp_kegg lcl|cit:102612383 1 133 + 133 Gaps:3 10.80 1241 74.63 5e-54 structural maintenance of chromosomes protein 4-like
blastp_kegg lcl|gmx:100781330 1 125 + 125 Gaps:1 9.98 1242 79.84 2e-53 structural maintenance of chromosomes protein 4-like
blastp_kegg lcl|cic:CICLE_v10010934mg 1 133 + 133 Gaps:3 10.82 1239 73.88 2e-53 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0100760 1 125 + 125 Gaps:1 9.85 1259 78.23 7e-52 Structural maintenance of chromosome putative
blastp_kegg lcl|mtr:MTR_8g072890 1 125 + 125 Gaps:1 9.90 1252 74.19 8e-48 Structural maintenance of chromosomes protein
blastp_pdb 3l51_B 1 53 + 53 Gaps:2 30.72 166 52.94 1e-07 mol:protein length:166 Structural maintenance of chromosomes protein
blastp_uniprot_sprot sp|Q9FJL0|SMC4_ARATH 1 125 + 125 Gaps:1 9.99 1241 69.35 2e-39 Structural maintenance of chromosomes protein 4 OS Arabidopsis thaliana GN SMC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ERA5|SMC4_MICAR 1 117 + 117 Gaps:9 8.69 1243 42.59 8e-13 Structural maintenance of chromosomes protein 4 (Fragment) OS Microtus arvalis GN SMC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8CG47|SMC4_MOUSE 1 83 + 83 Gaps:3 6.22 1286 48.75 1e-12 Structural maintenance of chromosomes protein 4 OS Mus musculus GN Smc4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9NTJ3|SMC4_HUMAN 1 83 + 83 Gaps:3 6.21 1288 48.75 2e-12 Structural maintenance of chromosomes protein 4 OS Homo sapiens GN SMC4 PE 1 SV 2
blastp_uniprot_sprot sp|P50532|SMC4_XENLA 1 98 + 98 Gaps:3 7.36 1290 42.11 3e-12 Structural maintenance of chromosomes protein 4 OS Xenopus laevis GN smc4 PE 1 SV 1
blastp_uniprot_sprot sp|Q54LV0|SMC4_DICDI 4 125 + 122 Gaps:4 8.48 1415 37.50 7e-12 Structural maintenance of chromosomes protein 4 OS Dictyostelium discoideum GN smc4 PE 3 SV 1
blastp_uniprot_sprot sp|P41004|SMC4_SCHPO 4 125 + 122 Gaps:11 9.44 1324 36.00 9e-11 Structural maintenance of chromosomes protein 4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cut3 PE 1 SV 2
blastp_uniprot_sprot sp|Q12267|SMC4_YEAST 4 124 + 121 Gaps:19 8.60 1418 40.16 7e-08 Structural maintenance of chromosomes protein 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC4 PE 1 SV 1
blastp_uniprot_sprot sp|O66878|SMC_AQUAE 9 171 + 163 Gaps:24 13.75 1156 30.82 9e-06 Chromosome partition protein Smc OS Aquifex aeolicus (strain VF5) GN smc PE 3 SV 1
rpsblast_cdd gnl|CDD|31389 4 126 + 123 Gaps:4 10.23 1163 28.57 3e-10 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|162740 4 124 + 121 Gaps:8 10.05 1164 35.04 7e-09 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|162739 9 125 + 117 Gaps:8 10.26 1179 25.62 3e-07 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_kog gnl|CDD|36214 1 125 + 125 Gaps:2 9.51 1293 43.90 3e-26 KOG0996 KOG0996 KOG0996 Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35241 8 125 + 118 Gaps:9 10.60 1141 27.27 9e-08 KOG0018 KOG0018 KOG0018 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 16 178 163 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 3 10 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 11 15 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 15 15 SIGNAL_PEPTIDE none Signal peptide region none
SUPERFAMILY 3 63 61 SSF75553 none none IPR010935
PANTHER 1 125 125 PTHR18937:SF171 none none none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Coils 104 125 22 Coil none none none
Coils 76 97 22 Coil none none none
PANTHER 1 125 125 PTHR18937 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 5 0.499 0.128 NON-PLANT 21