4 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0055085 | transmembrane transport | The process in which a solute is transported from one side of a membrane to the other. |
| GO:0016021 | integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| GO:0006812 | cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| GO:0008324 | cation transmembrane transporter activity | Enables the transfer of cation from one side of the membrane to the other. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pper:PRUPE_ppa006837mg | 1 | 124 | + | 124 | Gaps:29 | 35.37 | 393 | 58.99 | 2e-40 | hypothetical protein |
| blastp_kegg | lcl|pxb:103958886 | 1 | 124 | + | 124 | Gaps:30 | 35.53 | 394 | 60.00 | 1e-39 | metal tolerance protein C2 |
| blastp_kegg | lcl|pmum:103339410 | 1 | 124 | + | 124 | Gaps:30 | 35.20 | 392 | 57.97 | 5e-39 | metal tolerance protein C2 |
| blastp_kegg | lcl|mdm:103411491 | 1 | 124 | + | 124 | Gaps:30 | 56.68 | 247 | 57.86 | 4e-38 | metal tolerance protein C2-like |
| blastp_kegg | lcl|mdm:103443135 | 1 | 124 | + | 124 | Gaps:30 | 35.53 | 394 | 57.86 | 9e-38 | metal tolerance protein C2 |
| blastp_kegg | lcl|fve:101313039 | 1 | 124 | + | 124 | Gaps:19 | 33.68 | 383 | 60.47 | 2e-37 | metal tolerance protein C2-like |
| blastp_kegg | lcl|mdm:103421742 | 1 | 124 | + | 124 | Gaps:30 | 35.53 | 394 | 57.86 | 3e-37 | metal tolerance protein C2-like |
| blastp_kegg | lcl|cmo:103486757 | 1 | 124 | + | 124 | Gaps:24 | 36.50 | 400 | 50.68 | 4e-33 | metal tolerance protein C2 |
| blastp_kegg | lcl|tcc:TCM_024921 | 1 | 124 | + | 124 | Gaps:27 | 34.17 | 436 | 51.01 | 5e-33 | Cation efflux family protein |
| blastp_kegg | lcl|csv:101220736 | 1 | 124 | + | 124 | Gaps:24 | 36.50 | 400 | 50.68 | 2e-32 | metal tolerance protein C2-like |
| blastp_uniprot_sprot | sp|Q6ICY4|MTPC2_ARATH | 1 | 124 | + | 124 | Gaps:23 | 35.37 | 393 | 48.20 | 3e-26 | Metal tolerance protein C2 OS Arabidopsis thaliana GN MTPC2 PE 1 SV 1 |
5 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 1 | 98 | 98 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| PANTHER | 16 | 124 | 109 | PTHR11562 | none | none | IPR002524 |
| Phobius | 99 | 119 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| PANTHER | 16 | 124 | 109 | PTHR11562:SF23 | none | none | none |
| Phobius | 120 | 129 | 10 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
10 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
| Bourran2_2014_nP_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 7,9 | 0,09 | 30,09 | lod | 2,3636 | 5 |
| Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
| Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
| Bourran2_2014_nEpiBC_A4 | Qrob_Chr07 | 7 | s_2FI9D9_500 | s_1AXDMJ_325 | 12,26 | 0 | 34,9 | lod | 2,2306 | 6,1 |
| Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
