Protein : Qrob_P0287450.2 Q. robur
Protein Identifier  ? Qrob_P0287450.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PF01789 - PsbP Gene Prediction Quality  validated
Protein length 

Sequence

Length: 263  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009654 photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO:0019898 extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026794 6 260 + 255 Gaps:4 88.07 285 83.27 8e-142 Photosystem II reaction center PsbP family protein isoform 1
blastp_kegg lcl|vvi:100259632 6 262 + 257 Gaps:22 98.94 282 75.63 5e-140 psbP domain-containing protein 1 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1435730 6 260 + 255 Gaps:7 98.87 265 75.95 4e-134 Thylakoid lumenal 21.5 kDa protein chloroplast precursor putative
blastp_kegg lcl|pop:POPTR_0005s01430g 6 261 + 256 Gaps:9 98.49 265 78.16 4e-134 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s00790g 6 260 + 255 Gaps:5 98.11 265 77.31 1e-133 POPTRDRAFT_1096006 hypothetical protein
blastp_kegg lcl|cit:102607332 42 260 + 219 none 78.49 279 84.93 3e-129 psbP domain-containing protein 1 chloroplastic-like
blastp_kegg lcl|pxb:103930071 45 261 + 217 Gaps:1 69.87 312 83.03 9e-126 chloroplast stem-loop binding protein of 41 kDa b chloroplastic-like
blastp_kegg lcl|mdm:103434066 45 260 + 216 Gaps:1 87.50 248 82.49 3e-124 psbP domain-containing protein 1 chloroplastic-like
blastp_kegg lcl|gmx:100792664 1 262 + 262 Gaps:4 100.00 258 73.64 1e-123 psbP domain-containing protein 1 chloroplastic-like
blastp_kegg lcl|pxb:103928222 45 261 + 217 Gaps:1 88.62 246 81.65 2e-123 psbP domain-containing protein 1 chloroplastic-like
blastp_pdb 2xb3_A 81 257 + 177 Gaps:21 95.76 165 33.54 2e-18 mol:protein length:165 PSBP PROTEIN
blastp_uniprot_sprot sp|O23403|PPD1_ARATH 37 260 + 224 Gaps:4 78.05 287 70.98 6e-105 PsbP domain-containing protein 1 chloroplastic OS Arabidopsis thaliana GN PPD1 PE 1 SV 1
blastp_uniprot_sprot sp|P82538|PPL1_ARATH 76 258 + 183 Gaps:28 67.39 230 29.03 6e-08 PsbP-like protein 1 chloroplastic OS Arabidopsis thaliana GN PPL1 PE 1 SV 1
rpsblast_cdd gnl|CDD|177690 38 259 + 222 Gaps:4 77.62 286 72.52 2e-85 PLN00059 PLN00059 PsbP domain-containing protein 1 Provisional.
rpsblast_cdd gnl|CDD|201975 73 258 + 186 Gaps:25 100.00 163 38.04 1e-44 pfam01789 PsbP PsbP. This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 83 257 175 SSF55724 none none IPR016123
PANTHER 213 260 48 PTHR31407:SF9 none none none
PANTHER 50 195 146 PTHR31407:SF9 none none none
PANTHER 213 260 48 PTHR31407 none none none
PANTHER 50 195 146 PTHR31407 none none none
Gene3D 80 257 178 G3DSA:3.40.1000.10 none none IPR016123
Pfam 73 257 185 PF01789 none PsbP IPR002683

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 105   Mitochondrion 5 0.182 0.319 NON-PLANT 105