Protein : Qrob_P0284380.2 Q. robur
Protein Identifier  ? Qrob_P0284380.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 3.6.3.47 - Fatty-acyl-CoA-transporting ATPase. Code Enzyme  EC:3.6.3.47
Gene Prediction Quality  validated Protein length 

Sequence

Length: 719  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s18400g 86 716 + 631 Gaps:52 89.72 759 75.48 0.0 POPTRDRAFT_226685 hypothetical protein
blastp_kegg lcl|cit:102617657 7 714 + 708 Gaps:86 98.73 788 68.64 0.0 ABC transporter D family member 2 chloroplastic-like
blastp_kegg lcl|pmum:103325556 97 713 + 617 Gaps:49 86.57 767 74.70 0.0 ABC transporter D family member 2 chloroplastic
blastp_kegg lcl|pxb:103953287 99 714 + 616 Gaps:47 84.74 780 74.58 0.0 ABC transporter D family member 2 chloroplastic-like
blastp_kegg lcl|fve:101294927 99 714 + 616 Gaps:49 88.90 739 75.95 0.0 ABC transporter D family member 2 chloroplastic-like
blastp_kegg lcl|vvi:100258729 95 718 + 624 Gaps:54 92.24 722 76.13 0.0 ABC transporter D family member 2 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1559090 8 714 + 707 Gaps:74 99.33 742 69.47 0.0 peroxisomal membrane protein putative (EC:3.6.3.44)
blastp_kegg lcl|tcc:TCM_033691 53 712 + 660 Gaps:66 95.14 740 71.73 0.0 Peroxisomal membrane ABC transporter family isoform 1
blastp_kegg lcl|pper:PRUPE_ppa002750mg 131 713 + 583 Gaps:48 99.06 637 75.75 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_005G044400g 8 711 + 704 Gaps:60 98.94 754 66.35 0.0 hypothetical protein
blastp_pdb 2yl4_A 428 716 + 289 Gaps:71 40.00 595 32.35 3e-10 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3g61_B 376 718 + 343 Gaps:78 30.30 1284 31.36 7e-10 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 376 718 + 343 Gaps:78 30.30 1284 31.36 7e-10 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 376 718 + 343 Gaps:78 30.30 1284 31.36 7e-10 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 376 718 + 343 Gaps:78 30.30 1284 31.36 7e-10 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_B 376 718 + 343 Gaps:78 30.30 1284 31.36 8e-10 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 376 718 + 343 Gaps:78 30.30 1284 31.36 8e-10 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 4aa3_A 428 716 + 289 Gaps:71 38.45 619 31.93 4e-09 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3nhb_A 428 716 + 289 Gaps:63 75.82 306 30.17 4e-08 mol:protein length:306 ATP-binding cassette sub-family B member 6 m
blastp_pdb 3nha_A 428 716 + 289 Gaps:63 75.82 306 30.17 4e-08 mol:protein length:306 ATP-binding cassette sub-family B member 6 m
blastp_uniprot_sprot sp|Q6NLC1|AB2D_ARATH 100 716 + 617 Gaps:84 90.79 706 69.42 0.0 ABC transporter D family member 2 chloroplastic OS Arabidopsis thaliana GN ABCC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q55774|Y182_SYNY3 114 708 + 595 Gaps:113 84.72 661 41.25 1e-113 Uncharacterized ABC transporter ATP-binding protein sll0182 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN sll0182 PE 3 SV 1
blastp_uniprot_sprot sp|Q57335|Y036_HAEIN 109 688 + 580 Gaps:116 91.55 592 31.37 2e-68 Uncharacterized ABC transporter ATP-binding protein HI_0036 OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN HI_0036 PE 3 SV 1
blastp_uniprot_sprot sp|P45221|Y1467_HAEIN 106 693 + 588 Gaps:119 93.21 589 33.52 4e-68 Uncharacterized ABC transporter ATP-binding protein HI_1467 OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN HI_1467 PE 3 SV 1
blastp_uniprot_sprot sp|Q50614|BACA_MYCTU 109 690 + 582 Gaps:133 89.67 639 33.16 1e-61 Vitamin B12 transport ATP-binding protein BacA OS Mycobacterium tuberculosis GN bacA PE 1 SV 1
blastp_uniprot_sprot sp|O89016|ABCD4_MOUSE 107 690 + 584 Gaps:125 94.55 606 30.72 3e-48 ATP-binding cassette sub-family D member 4 OS Mus musculus GN Abcd4 PE 2 SV 2
blastp_uniprot_sprot sp|O14678|ABCD4_HUMAN 156 691 + 536 Gaps:115 86.96 606 30.93 5e-48 ATP-binding cassette sub-family D member 4 OS Homo sapiens GN ABCD4 PE 1 SV 1
blastp_uniprot_sprot sp|Q94FB9|AB1D_ARATH 131 711 + 581 Gaps:235 78.76 1337 32.10 1e-47 ABC transporter D family member 1 OS Arabidopsis thaliana GN ABCC1 PE 1 SV 1
blastp_uniprot_sprot sp|P28288|ABCD3_HUMAN 95 712 + 618 Gaps:184 92.56 659 28.69 1e-47 ATP-binding cassette sub-family D member 3 OS Homo sapiens GN ABCD3 PE 1 SV 1
blastp_uniprot_sprot sp|P55096|ABCD3_MOUSE 95 712 + 618 Gaps:186 92.56 659 29.34 6e-46 ATP-binding cassette sub-family D member 3 OS Mus musculus GN Abcd3 PE 1 SV 2

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 453 691 239 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Pfam 445 650 206 PF00005 none ABC transporter IPR003439
Phobius 268 272 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 429 489 61 G3DSA:3.40.50.300 none none IPR027417
Gene3D 528 550 23 G3DSA:3.40.50.300 none none IPR027417
Gene3D 584 690 107 G3DSA:3.40.50.300 none none IPR027417
Phobius 297 718 422 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 578 708 131 PTHR11384:SF3 none none none
Gene3D 109 428 320 G3DSA:1.20.1560.10 none none none
Phobius 245 267 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 153 171 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 133 416 284 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Pfam 107 381 275 PF06472 none ABC transporter transmembrane region 2 IPR011527
PANTHER 59 492 434 PTHR11384 none none none
ProSiteProfiles 428 718 291 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 273 296 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 591 690 100 SSF52540 none none IPR027417
SUPERFAMILY 420 500 81 SSF52540 none none IPR027417
Phobius 1 131 131 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 193 244 52 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 109 431 323 SSF90123 none none IPR011527
ProSitePatterns 622 636 15 PS00211 none ABC transporters family signature. IPR017871
PANTHER 578 708 131 PTHR11384 none none none
PANTHER 525 550 26 PTHR11384 none none none
PANTHER 59 492 434 PTHR11384:SF3 none none none
PANTHER 525 550 26 PTHR11384:SF3 none none none
Phobius 132 152 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 172 192 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

4 Localization

Analysis Start End Length
TMHMM 240 262 22
TMHMM 269 291 22
TMHMM 130 152 22
TMHMM 172 189 17

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting